Michael Snyder

发表

Consumer Wearable Devices for Health Surveillance and Disease Monitoring

Xiao Li, Jessilyn Dunn, Denis Salins, 2017, CRI.

An XML application for genomic data interoperation

Kei-Hoi Cheung, Yang Liu, Mark Gerstein, 2001, Proceedings 2nd Annual IEEE International Symposium on Bioinformatics and Bioengineering (BIBE 2001).

Measuring the Evolutionary Rewiring of Biological Networks

Mark Gerstein, Michael Snyder, Nitin Bhardwaj, 2011, PLoS Comput. Biol..

Corrigendum: Secure cloud computing for genomic data

Michael Snyder, Somalee Datta, Keith Bettinger, 2016, Nature Biotechnology.

Active Learning Pipeline for Brain Mapping in a High Performance Computing Environment

Michael Snyder, Kwanghun Chung, Laura J. Brattain, 2020, 2020 IEEE High Performance Extreme Computing Conference (HPEC).

Additive Manufacturing Facility (AMF)

Michael Snyder, Niki Werkheiser, 2016 .

A dynamic approach to mapping coordinates between microplates and microarrays

Kei-Hoi Cheung, Perry L. Miller, Michael Snyder, 2002, J. Biomed. Informatics.

A metadata framework for interoperating heterogeneous genome data using XML

Kei-Hoi Cheung, Perry L. Miller, Michael Snyder, 2001, AMIA.

Design Reference Missions for Archinaut: A Roadmap for In-Space Robotic Manufacturing and Assembly

Michael Snyder, Simon Patane, John J. Schomer, 2018 .

VAT: a computational framework to functionally annotate variants in personal genomes within a cloud-computing environment

Mark Gerstein, David Z. Chen, Michael Snyder, 2012, Bioinform..

Harnessing Big Data for Precision Medicine: Infrastructures and Applications

Steven N. Hart, Michael Snyder, Stephen C. J. Parker, 2017, PSB.

Bioinformatics Original Paper a Supervised Hidden Markov Model Framework for Efficiently Segmenting Tiling Array Data in Transcriptional and Chip-chip Experiments: Systematically Incorporating Validated Biological Knowledge

Mark Gerstein, Jan O. Korbel, Michael Snyder, 2022 .

Practical Guidelines for Secure Cloud Computing for Genomic Data

Michael Snyder, Somalee Datta, Keith Bettinger, 2015 .

Modeling ChIP Sequencing In Silico with Applications

Mark Gerstein, Michael Snyder, Joel S. Rozowsky, 2008, PLoS Comput. Biol..

Extrapolating traditional DNA microarray statistics to tiling and protein microarray technologies.

Michael Snyder, Haiyuan Yu, Xiaowei Zhu, 2006, Methods in enzymology.

A 450-MHz RISC microprocessor with enhanced instruction set and copper interconnect

Michael Snyder, Minh Vo, Hector Sanchez, 1999 .

Fast Optimal Genome Tiling with Applications to Microarray Design and Homology Search

Ming-Yang Kao, Mark Gerstein, Piotr Berman, 2002, WABI.

Open Access Methodology Article Motips: Automated Motif Analysis for Predicting Targets of Modular Protein Domains

Mark Gerstein, Michael Snyder, Sachdev S. Sidhu, 2022 .

Fast Optimal Genome Tiling with Applications to Microarray Design and Homology Search

Ming-Yang Kao, Mark Gerstein, Piotr Berman, 2002, WABI.

Omics AnalySIs System for PRecision Oncology (OASISPRO): a web-based omics analysis tool for clinical phenotype prediction

Michael Snyder, Warren Chan, Kun-Hsing Yu, 2018, Bioinform..

Windows Into Human Health Through Wearables Data Analytics.

Jessilyn Dunn, Michael Snyder, Daniel R. Witt, 2019, Current opinion in biomedical engineering.

795 Decoding regulatory sequence across skin differentiation with deep learning

Michael Snyder, Daniel S. Kim, Anshul Kundaje, 2018 .

ExpressYourself: a modular platform for processing and visualizing microarray data

Mark Gerstein, Nicholas M. Luscombe, Nathaniel Echols, 2003, Nucleic Acids Res..

Graphically-enabled integration of bioinformatics tools allowing parallel execution

Kei-Hoi Cheung, Perry L. Miller, Michael Snyder, 2000, AMIA.

Integrating Sequencing Technologies in Personal Genomics: Optimal Low Cost Reconstruction of Structural Variants

Mark Gerstein, Michael Snyder, Yong Kong, 2009, PLoS Comput. Biol..

The TRIPLES database: a community resource for yeast molecular biology

Kei-Hoi Cheung, Yang Liu, Perry L. Miller, 2002, Nucleic Acids Res..

Analysis of Genomic Tiling Microarrays for Transcript Mapping and the Identification of Transcription Factor Binding Sites

Mark Gerstein, Michael Snyder, Paul Bertone, 2005, BSB.

Invited Talks at the AAAI Symposium on Well-Being Computing

Rafael A. Calvo, Michael Snyder, Dennis P. Wall, 2016, AAAI Spring Symposia.

Cloud-based interactive analytics for terabytes of genomic variants data

Michael Snyder, Jonathan Bingham, Cuiping Pan, 2017, Bioinform..

Comparative analysis of regulatory information and circuits across distant species

Peter J. Bickel, Mark Gerstein, Philip Cayting, 2014, Nature.

YMD: a microarray database for large-scale gene expression analysis

Kei-Hoi Cheung, Mark Gerstein, Perry L. Miller, 2002, AMIA.

Development Path for In-Space Additive Manufacturing

Michael Snyder, Simon Patane, John J. Schomer, 2018 .

PATH-SCAN: A Reporting Tool for Identifying Clinically Actionable Variants

Russ B. Altman, Teri E. Klein, Michael Snyder, 2013, Pacific Symposium on Biocomputing.

Regional Strategy for the Implementation of Natural Gas as a Transportation Fuel

Michael Snyder, Nicholas Barnett, Annamarie Murray, 2012 .

Predicting Non-Small Cell Lung Cancer Diagnosis and Prognosis by Fully Automated Microscopic Pathology Image Features

Christopher Ré, Russ B. Altman, Daniel L. Rubin, 2017, AMIA.

SU‐E‐T‐283: Deforming Planning CT Images to CBCT Images Using MIMVista

Michael Snyder, E. Wennerstrom, C Knill, 2011 .

Transcription interference networks examined by single molecule long read sequencing technology

Michael Snyder, Zsolt Boldogkoi Dora Tombacz Zsolt Csabai Peter Olah Don Sharon, 2015 .

Unraveling the Molecular Basis of Lung Adenocarcinoma Dedifferentiation and Prognosis by Integrating Omics and Histopathology

Christopher Ré, Russ B. Altman, Daniel L. Rubin, 2018, AMIA.

An integrative ENCODE resource for cancer genomics

Jie Xu, Lucas Lochovsky, Donghoon Lee, 2019, Nature Communications.

Bioinformatics Applications Note Gene Expression Rseqtools: a Modular Framework to Analyze Rna-seq Data Using Compact, Anonymized Data Summaries

Mark Gerstein, Ashish Agarwal, Michael Snyder, 2022 .

Construction and Analysis of an Integrated Regulatory Network Derived from High-Throughput Sequencing Data

Wei Niu, Mark Gerstein, Jiang Qian, 2011, PLoS Comput. Biol..

Control of Coupled Chaotic Systems from Few to Many (N=60)

Richard Wiener, Michael Snyder, Thomas Olsen, 2002 .

TRIPLES: a database of gene function in Saccharomyces cerevisiae

Kei-Hoi Cheung, Perry L. Miller, Michael Snyder, 2000, Nucleic Acids Res..

Interpretome: A Freely Available, Modular, and Secure Personal Genome Interpretation Engine

Russ B. Altman, Joel Dudley, Nicholas P. Tatonetti, 2011, Pacific Symposium on Biocomputing.

Dual Isoform Sequencing Reveals a Multifaceted Transcriptional Architecture of a Prototype Baculovirus

Michael Snyder, Zsolt Boldogkői, Gábor Torma, 2021 .

Extensive Transcript Diversity and Novel Upstream Open Reading Frame Regulation in Yeast

Michael Snyder, Michael P. Snyder, Karl Waern, 2013, G3: Genes | Genomes | Genetics.

Dynamic trans-Acting Factor Colocalization in Human Cells

Dan Xie, Michael Snyder, Jie Zhai, 2013, Cell.

Sequence to Medical Phenotypes: A Framework for Interpretation of Human Whole Genome DNA Sequence Data

Russ B. Altman, Matthew Wheeler, Teri E. Klein, 2015, PLoS genetics.

Synthetic long read sequencing reveals the composition and intraspecies diversity of the human microbiome

Michael Snyder, Serafim Batzoglou, Volodymyr Kuleshov, 2015, Nature Biotechnology.

Dynamic transcriptome profiling dataset of vaccinia virus obtained from long-read sequencing techniques

Michael Snyder, Attila Szűcs, Zsolt Boldogkői, 2018, GigaScience.

Clinical interpretation and implications of whole-genome sequencing.

Euan A Ashley, Michael Snyder, Michelle Whirl-Carrillo, 2014, JAMA.

Full Genome Sequence of the Western Reserve Strain of Vaccinia Virus Determined by Third-Generation Sequencing

Michael Snyder, Attila Szűcs, Zsolt Boldogkői, 2018, Genome Announcements.

Extensive Variation in Chromatin States Across Humans

Dan Xie, Michael Snyder, Manolis Kellis, 2013, Science.

High-Coverage Whole-Exome Sequencing Identifies Candidate Genes for Suicide in Victims with Major Depressive Disorder

Michael Snyder, Miklós Palkovits, Zsolt Boldogkői, 2017, Scientific Reports.

Sequencing The Transcriptional Landscape of the Yeast Genome Defined by RNA

Mark Gerstein, Michael Snyder, Chong Shou, 2013 .

Reassessment of Piwi binding to the genome and Piwi impact on RNA polymerase II distribution.

Michael Snyder, Anshul Kundaje, Anton Valouev, 2015, Developmental cell.

A genomic analysis of RNA polymerase II modification and chromatin architecture related to 3' end RNA polyadenylation.

Mark Gerstein, Michael Snyder, Alexander Karpikov, 2008, Genome research.

Performance comparison of whole-genome sequencing platforms

Euan A Ashley, Rong Chen, Michael Snyder, 2011, Nature Biotechnology.

Long-Read Isoform Sequencing Reveals a Hidden Complexity of the Transcriptional Landscape of Herpes Simplex Virus Type 1

Michael Snyder, Attila Szűcs, Zsolt Boldogkői, 2017, Front. Microbiol..

A highly integrated and complex PPARGC1A transcription factor binding network in HepG2 cells

Michael Snyder, Michael P. Snyder, Brian D. Reed, 2012, Genome research.