David L. Beveridge

发表

Root Mean Square Deviation Probability Analysis of Molecular Dynamics Trajectories on DNA

Surjit B. Dixit, Sergei Y. Ponomarev, David L. Beveridge, 2006, J. Chem. Inf. Model..

Free‐energy component analysis of 40 protein–DNA complexes: A consensus view on the thermodynamics of binding at the molecular level

A. Das, B. Jayaram, Surjit B. Dixit, 2002, J. Comput. Chem..

Remote Terminal Computer Graphics

David L. Beveridge, Elias Guth, 1975 .

Structural bioinformatics of DNA: a web-based tool for the analysis of molecular dynamics results and structure prediction

Surjit B. Dixit, David L. Beveridge, D. Beveridge, 2006, Bioinform..

Conformational preferences of phosphodiester torsion angles in dimethyl phosphate anion in free space and water: quasi-harmonic Monte Carlo and hydration shell calculations

Bhyravabhotla Jayaram, David L. Beveridge, D. Beveridge, 1988 .

A theoretical study of polyelectrolyte effects in protein-DNA interactions: Monte Carlo free energy simulations on the ion atmosphere contribution to the thermodynamics of .lambda. repressor-operator complex formation

Bhyravabhotla Jayaram, David L. Beveridge, D. Beveridge, 1991 .

Dynamical allosterism in the mechanism of action of DNA mismatch repair protein MutS.

David L. Beveridge, D. Beveridge, S. Pieniazek, 2011, Biophysical journal.

Convergence characteristics of Monte Carlo–Metropolis computer simulations on liquid water

Mihaly Mezei, David L. Beveridge, M. Mezei, 1979 .

Approximate molecular orbital theory

David L. Beveridge, J. Pople, D. Beveridge, 1970 .

Theoretical studies of hydrogen bonding in liquid water and dilute aqueous solutions

Mihaly Mezei, David L. Beveridge, M. Mezei, 1981 .

Free Energy Analysis of the Conformational Preferences of A and B Forms of DNA in Solution

Bhyravabhotla Jayaram, David L. Beveridge, D. Beveridge, 1998 .

Local dielectric environment of B-DNA in solution : Results from a 14 ns molecular dynamics trajectory

Bhyravabhotla Jayaram, David L. Beveridge, D. Beveridge, 1998 .

Molecular Dynamics Simulation of a Class A .beta.-Lactamase: Structural and Mechanistic Implications

David L. Beveridge, D. Beveridge, G. Ravishanker, 1995 .

Intrusion of Counterions into the Spine of Hydration in the Minor Groove of B-DNA: Fractional Occupancy of Electronegative Pockets

Bhyravabhotla Jayaram, David L. Beveridge, D. Beveridge, 1997 .

Aqueous hydration of benzene

Mihaly Mezei, David L. Beveridge, M. Mezei, 1984 .

Free energy of an arbitrary charge distribution imbedded in coaxial cylindrical dielectric continua: application to conformational preferences of DNA in aqueous solutions

David L. Beveridge, B. Jayaram, 1990 .

Molecular dynamics studies of DNA

David L. Beveridge, D. Beveridge, G. Ravishanker, 1994 .

Free energy of a charge distribution in a spheroidal cavity in a polarizable dielectric continuum

David L. Beveridge, Shirley W. Harrison, Hans J. Nolte, 1976 .

Monte Carlo computer simulation study of the hydrophobic effect. Potential of mean force for [(CH4)2]aq at 25 and 50 °C

Mihaly Mezei, David L. Beveridge, M. Mezei, 1982 .

Monte Carlo determination of the free energy and internal energy of hydration for the Ala dipeptide at 25.degree.C

Mihaly Mezei, David L. Beveridge, M. Mezei, 1985 .

Molecular Dynamics: DNA

David L. Beveridge, D. Beveridge, 2002 .

Convergence acceleration in Monte Carlo computer simulation on water and aqueous solutions

Mihaly Mezei, David L. Beveridge, M. Mezei, 1983 .

Solvation Free Energy of Biomacromolecules: Parameters for a Modified Generalized Born Model Consistent with the AMBER Force Field

Bhyravabhotla Jayaram, David L. Beveridge, D. Beveridge, 1998 .

Free Energy Analysis of Protein-DNA Binding

Bhyravabhotla Jayaram, Surjit B. Dixit, David L. Beveridge, 1999 .

Monte Carlo Simulation Studies on the Structure of the Counterion Atmosphere of B-DNA. Variations on the Primitive Dielectric Model

Bhyravabhotla Jayaram, Barry Honig, David L. Beveridge, 1990 .

Prediction of the protonation state of the active site aspartyl residues in HIV-1 protease-inhibitor complexes via molecular dynamics simulation

David L. Beveridge, William E. Harte, 1993 .

Free Energy Analysis of ProteinDNA Binding: The EcoRI EndonucleaseDNA Complex

Surjit B. Dixit, David L. Beveridge, Kevin J. McConnell, 1999 .