Ernesto Picardi

发表

IVaCS: an Integrated Variant Calling System

Matteo Chiara, Giovanni Chillemi, Mattia D'Antonio, 2016 .

ExpEdit: a webserver to explore human RNA editing in RNA-Seq experiments

Mattia D'Antonio, Ernesto Picardi, Graziano Pesole, 2011, Bioinform..

The LIBI Grid Platform an International Laboratory for Bioinformatics

Ernesto Picardi, Italo Epicoco, Sandro Fiore, 2008 .

ASPicDB: a database of annotated transcript and protein variants generated by alternative splicing

Paola Bonizzoni, Mattia D'Antonio, Ernesto Picardi, 2010, Nucleic Acids Res..

EasyCluster2: an improved tool for clustering and assembling long transcriptome reads

Ernesto Picardi, Graziano Pesole, Vitoantonio Bevilacqua, 2014, BMC Bioinformatics.

REDIportal: a comprehensive database of A-to-I RNA editing events in humans

Ernesto Picardi, Graziano Pesole, Anna Maria D'Erchia, 2016, Nucleic Acids Res..

REDItools: high-throughput RNA editing detection made easy

Ernesto Picardi, Graziano Pesole, G. Pesole, 2013, Bioinform..

MToolBox: a highly automated pipeline for heteroplasmy annotation and prioritization analysis of human mitochondrial variants in high-throughput sequencing

Ernesto Picardi, Graziano Pesole, Marcella Attimonelli, 2014, Bioinform..

ASPicDB: a database web tool for alternative splicing analysis.

Mattia D'Antonio, Ernesto Picardi, Graziano Pesole, 2015, Methods in molecular biology.

Good laboratory practices and L.I.M.S. system: the challenge for a Next Generation Sequencing and bioinformatic research laboratory

Ernesto Picardi, Graziano Pesole, Antonella Lanati, 2017 .

WEP: an high-performance analysis pipeline for whole-exome sequencing data

Mattia D'Antonio, Ernesto Picardi, Graziano Pesole, 2013 .

New Tools for Expression Alternative Splicing Validation

Ernesto Picardi, Graziano Pesole, Vito Renó, 2010, ICIC.

Next generation sequencing of SARS-CoV-2 genomes: challenges, applications and opportunities

Ernesto Picardi, Graziano Pesole, Giulio Pavesi, 2020, Briefings Bioinform..

Elucidating the editome: bioinformatics approaches for RNA editing detection

Ernesto Picardi, Graziano Pesole, Maria Angela Diroma, 2019, Briefings Bioinform..

Detecting Alternative Gene Structures from Spliced ESTs: A Computational Approach

Paola Bonizzoni, Yuri Pirola, Ernesto Picardi, 2009, J. Comput. Biol..

Is plant mitochondrial RNA editing a source of phylogenetic incongruence? An answer from in silico and in vivo data sets

Ernesto Picardi, Carla Quagliariello, E. Picardi, 2008, BMC Bioinformatics.

Bioinformatics approaches for genomics and post genomics applications of next-generation sequencing

Ernesto Picardi, Graziano Pesole, Giulio Pavesi, 2010, Briefings Bioinform..

HPC-REDItools: a novel HPC-aware tool for improved large scale RNA-editing analysis

Tiziano Flati, Silvia Gioiosa, Ernesto Picardi, 2020, BMC Bioinformatics.

A Novel Approach to Clustering and Assembly of Large-Scale Roche 454 Transcriptome Data for Gene Validation and Alternative Splicing Analysis

Ernesto Picardi, Vitoantonio Bevilacqua, Fabio Stroppa, 2011, ICIC.

The Telethon core facility for Next Generation Sequencing Data

Mattia D'Antonio, Ernesto Picardi, Graziano Pesole, 2011 .

PIntron: a fast method for detecting the gene structure due to alternative splicing via maximal pairings of a pattern and a text

Paola Bonizzoni, Yuri Pirola, Ernesto Picardi, 2012, BMC Bioinformatics.

UTRdb and UTRsite (RELEASE 2010): a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs

Ernesto Picardi, Graziano Pesole, Giulio Pavesi, 2009, Nucleic Acids Res..

GenePC and ASPIC Integrate Gene Predictions with Expressed Sequence Alignments To Predict Alternative Transcripts

Ernesto Picardi, Graziano Pesole, Roderic Guigó, 2008, APBC.

Clustering and Assembling Large Transcriptome Datasets by EasyCluster2

Ernesto Picardi, Graziano Pesole, Vitoantonio Bevilacqua, 2013, ICIC.

REDIdb: the RNA editing database

Ernesto Picardi, Carla Quagliariello, Teresa Maria Rosaria Regina, 2006, Nucleic Acids Res..

EasyCluster: a fast and efficient gene-oriented clustering tool for large-scale transcriptome data

Ernesto Picardi, Graziano Pesole, Flavio Mignone, 2009, BMC Bioinformatics.

ASPicDB: A database resource for alternative splicing analysis

Paola Bonizzoni, Mattia D'Antonio, Ernesto Picardi, 2008, Bioinform..

HPC-REDItools: a novel HPC-aware tool for improved large scale RNA-editing analysis

Tiziano Flati, Silvia Gioiosa, Ernesto Picardi, 2020, BMC Bioinformatics.

EdiPy: A resource to simulate the evolution of plant mitochondrial genes under the RNA editing

Ernesto Picardi, Carla Quagliariello, E. Picardi, 2006, Comput. Biol. Chem..

WEP: a high-performance analysis pipeline for whole-exome data

Mattia D'Antonio, Ernesto Picardi, Graziano Pesole, 2013, BMC Bioinformatics.

Exploring the RNA editing potential of RNA-Seq data by ExpEdit.

Mattia D'Antonio, Ernesto Picardi, Graziano Pesole, 2015, Methods in molecular biology.

Critical assessment of bioinformatics methods for the characterization of pathological repeat expansions with single-molecule sequencing data

Ernesto Picardi, Graziano Pesole, Federico Zambelli, 2019, Briefings Bioinform..

Investigating RNA editing in deep transcriptome datasets with REDItools and REDIportal

Ernesto Picardi, Graziano Pesole, Marco Antonio Tangaro, 2020, Nature Protocols.

SpliceAid-F: a database of human splicing factors and their RNA-binding sites

Mattia D'Antonio, Ernesto Picardi, Graziano Pesole, 2012, Nucleic Acids Res..

ELIXIR-IT HPC@CINECA: high performance computing resources for the bioinformatics community

Tiziano Flati, Silvia Gioiosa, Ernesto Picardi, 2020, BMC Bioinformatics.

REDIportal: millions of novel A-to-I RNA editing events from thousands of RNAseq experiments

Tiziano Flati, Ernesto Picardi, Graziano Pesole, 2020, Nucleic Acids Res..

RNA Editing Detection in HPC Infrastructures.

Tiziano Flati, Silvia Gioiosa, Ernesto Picardi, 2021, Methods in molecular biology.

Computational methods for ab initio and comparative gene finding.

Ernesto Picardi, Graziano Pesole, G. Pesole, 2010, Methods in molecular biology.

MitoZoa: a curated mitochondrial genome database of metazoans for comparative genomics studies.

Mattia D'Antonio, Ernesto Picardi, Graziano Pesole, 2010, Mitochondrion.

Profiling RNA editing in human tissues: towards the inosinome Atlas

Ernesto Picardi, Graziano Pesole, Caterina Manzari, 2015, Scientific Reports.

REDIdb 3.0: A Comprehensive Collection of RNA Editing Events in Plant Organellar Genomes

Ernesto Picardi, Graziano Pesole, Claudio Lo Giudice, 2018, Front. Plant Sci..

A-to-I RNA editing in SARS-COV-2: real or artifact?

Ernesto Picardi, Graziano Pesole, Luigi Mansi, 2020, bioRxiv.

The influence of invasive jellyfish blooms on the aquatic microbiome in a coastal lagoon (Varano, SE Italy) detected by an Illumina-based deep sequencing strategy

Ernesto Picardi, Graziano Pesole, Carmela Gissi, 2015, Biological Invasions.

The LIBI Grid Platform for Bioinformatics

Ernesto Picardi, Piero Fariselli, Italo Epicoco, 2008 .

CoVaCS: a consensus variant calling system

Mattia D'Antonio, Tiziano Flati, Silvia Gioiosa, 2018, BMC Genomics.

A platform independent RNA-Seq protocol for the detection of transcriptome complexity

Ernesto Picardi, Graziano Pesole, Flavio Licciulli, 2013, BMC Genomics.

Massive transcriptome sequencing of human spinal cord tissues provides new insights into motor neuron degeneration in ALS

Ernesto Picardi, Graziano Pesole, Angela Gallo, 2017, Scientific Reports.

Large-scale detection and analysis of RNA editing in grape mtDNA by RNA deep-sequencing

Giorgio Valle, Ernesto Picardi, Graziano Pesole, 2010, Nucleic acids research.

RAP: RNA-Seq Analysis Pipeline, a new cloud-based NGS web application

Mattia D'Antonio, Ernesto Picardi, Graziano Pesole, 2015, BMC Genomics.

An improved procedure for clustering and assembly of large transcriptome data

Ernesto Picardi, Graziano Pesole, Vitoantonio Bevilacqua, 2012 .

Single-cell transcriptomics reveals specific RNA editing signatures in the human brain.

Ernesto Picardi, Graziano Pesole, David S Horner, 2017, RNA.

Using REDItools to Detect RNA Editing Events in NGS Datasets

Ernesto Picardi, Graziano Pesole, Anna Maria D'Erchia, 2015, Current protocols in bioinformatics.

Dynamic inosinome profiles reveal novel patient stratification and gender-specific differences in glioblastoma

Ernesto Picardi, Graziano Pesole, Angela Gallo, 2019, Genome Biology.