B. Jia

SnapFISH: a computational pipeline to identify chromatin loops from multiplexed DNA FISH data

B. Ren, Ming Hu, C. Strambio-De-Castillia, 2022, bioRxiv.

A spatial genome aligner for resolving chromatin architectures from multiplexed DNA FISH

B. Ren, C. Kern, Adam P. Jussila, 2023, Nature Biotechnology.

Single-molecule microscopy using tunable nanoscale confinement

François Michaud, Christopher M. J. McFaul, Jason S. Leith, 2013, Optics & Photonics - NanoScience + Engineering.

A spatial genome aligner for multiplexed DNA-FISH

B. Ren, C. Kern, Adam P. Jussila, 2022, bioRxiv.

Single-cell analysis of chromatin accessibility in the adult mouse brain

Hongkui Zeng, Bosiljka Tasic, Zizhen Yao, 2023, Nature.

Cell-type-specific 3D-genome organization and transcription regulation in the brain

X. Zhuang, Bing Ren, B. Jia, 2023, bioRxiv.