A. Rampadarath

发表

CASBERT: BERT-based retrieval for compositely annotated biosimulation model entities

D. Nickerson, Yuda Munarko, Y. Munarko, 2022, bioRxiv.

A Distribution-Moment Approximation for Coupled Dynamics of the Airway Wall and Airway Smooth Muscle.

G. Donovan, A. Rampadarath, 2018, Biophysical journal.

SBMate: A Framework for Evaluating Quality of Annotations in Systems Biology Models

H. Sauro, J. Hellerstein, D. Nickerson, 2021, bioRxiv.

Best Practices for Making Reproducible Biochemical Models.

Jonathan R. Karr, Herbert M Sauro, Jonathan R Karr, 2020, Cell systems.

libOmexMeta: enabling semantic annotation of models to support FAIR principles

David P. Nickerson, John H. Gennari, Herbert M. Sauro, 2021, Bioinform..

Improving reproducibility in computational biology research

David P. Nickerson, Jason A. Papin, Herbert M. Sauro, 2020, PLoS Comput. Biol..

Building a search tool for compositely annotated entities using Transformer-based approach: Case study in Biosimulation Model Search Engine (BMSE)

Yuda Munarko, Y. Munarko, A. Rampadarath, 2023, F1000Research.

Automated Execution of Simulation Studies in Systems Medicine Using SED-ML and COMBINE Archive

A. K. Rampadarath, D. P. Nickerson, D. Nickerson, 2021 .

BioSimulators: a central registry of simulation engines and services for recommending specific tools

Jonathan R. Karr, Frank T. Bergmann, Ryan K. Spangler, 2022, Nucleic Acids Res..