Mario S. Valdés-Tresanco

Identifying Potential Molecular Targets in Fungi Based on (Dis)Similarities in Binding Site Architecture with Proteins of the Human Pharmacolome

E. Moreno, I. Ramirez-Velasquez, Johann E. Bedoya-Cardona, 2023, Molecules.

Structure-based design and construction of a synthetic phage display nanobody library

Mario S Valdés-Tresanco, E. Moreno, Mario S. Valdés-Tresanco, 2022, BMC Research Notes.

Structural Insights into the Design of Synthetic Nanobody Libraries

Mario S Valdés-Tresanco, A. G. Pose, E. Moreno, 2022, Molecules.

AMDock: a versatile graphical tool for assisting molecular docking with Autodock Vina and Autodock4

P. A. Valiente, Mario E Valdés-Tresanco, Mario S Valdés-Tresanco, 2020, Biology direct.

gmx_MMPBSA: A New Tool to Perform End-State Free Energy Calculations with GROMACS.

P. A. Valiente, Mario E Valdés-Tresanco, Mario S Valdés-Tresanco, 2021, Journal of chemical theory and computation.

NbThermo: a new thermostability database for nanobodies

E. Moreno, Mario S. Valdés-Tresanco, Mario E. Valdés-Tresanco, 2023, Database J. Biol. Databases Curation.

Tailored Parameterization of the LIE Method for Calculating the Binding Free Energy of Vps34–Inhibitor Complexes

P. A. Valiente, Mario E Valdés-Tresanco, Mario S Valdés-Tresanco, 2021, ACS omega.

Structural Modeling of Nanobodies: A Benchmark of State-of-the-Art Artificial Intelligence Programs

E. Moreno, Mario S. Valdés-Tresanco, Mario E. Valdés-Tresanco, 2023, Molecules.

Protein surface roughness accounts for binding free energy of Plasmepsin II‐ligand complexes

G. Cocho, J. Nieto-Villar, P. A. Valiente, 2018, Journal of molecular recognition : JMR.

Assessment of Different Parameters on the Accuracy of Computational Alanine Scanning of Protein-Protein Complexes with the Molecular Mechanics/Generalized Born Surface Area Method.

P. A. Valiente, E. Moreno, Mario S. Valdés-Tresanco, 2023, Journal of Physical Chemistry B.