N. R. Clark

发表

Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool

Edward Y. Chen, E. Chen, Avi Ma’ayan, 2013, BMC Bioinformatics.

Scaffold hopping approach on the route to selective tankyrase inhibitors.

S. Aaronson, R. Pellicciari, A. Macchiarulo, 2014, European journal of medicinal chemistry.

Genes2FANs: connecting genes through functional association networks

Avi Ma’ayan, R. Dannenfelser, N. R. Clark, 2012, BMC Bioinformatics.

Dynamics of the discovery process of protein-protein interactions from low content studies

Avi Ma'ayan, Neil R. Clark, Zichen Wang, 2015, BMC Systems Biology.

Extraction and analysis of signatures from the Gene Expression Omnibus by the crowd

Kathleen M Jagodnik, Avi Ma'ayan, Pablo Gamallo, 2016, Nature Communications.

Integration of protein phosphorylation, acetylation, and methylation data sets to outline lung cancer signaling networks

Avi Ma'ayan, Travis Wheeler, Alexander Lachmann, 2018, Science Signaling.

Lean Big Data integration in systems biology and systems pharmacology.

Avi Ma'ayan, Zichen Wang, Andrew D Rouillard, 2014, Trends in pharmacological sciences.

Introduction to Statistical Methods for Analyzing Large Data Sets: Gene-Set Enrichment Analysis

Avi Ma'ayan, Neil R Clark, Avi Ma’ayan, 2011, Science Signaling.

Drug-induced adverse events prediction with the LINCS L1000 data

Avi Ma'ayan, Zichen Wang, Neil R. Clark, 2016, Bioinform..

L1000CDS2: LINCS L1000 characteristic direction signatures search engine

Marc Hafner, Rachel Hodos, Ben Readhead, 2016, npj Systems Biology and Applications.

The characteristic direction: a geometrical approach to identify differentially expressed genes

Kevin S. Hu, Axel S. Feldmann, E. Chen, 2014, BMC Bioinformatics.

Cell-specific prediction and application of drug-induced gene expression profiles

Jianying Hu, Joel Dudley, Fei Wang, 2017, PSB.

Metasignatures Identify Two Major Subtypes of Breast Cancer

Avi Ma’ayan, S. Gordonov, Q Duan, 2013, CPT: pharmacometrics & systems pharmacology.

Induction of a hemogenic program in mouse fibroblasts.

D. Papatsenko, Avi Ma’ayan, J. Kovacic, 2013, Cell stem cell.

Network2Canvas: network visualization on a canvas with enrichment analysis

Avi Ma'ayan, Ruth Dannenfelser, Christopher M. Tan, 2013, Bioinform..

Glucocorticoid receptor isoforms direct distinct mitochondrial programs to regulate ATP production

D. Ray, Avi Ma’ayan, A. Brass, 2016, Scientific Reports.

Introduction to Statistical Methods to Analyze Large Data Sets: Principal Components Analysis

Avi Ma'ayan, Neil R Clark, Avi Ma’ayan, 2011, Science Signaling.

Proteomics Analysis of the Non-Muscle Myosin Heavy Chain IIa-Enriched Actin-Myosin Complex Reveals Multiple Functions within the Podocyte

Avi Ma’ayan, B. O’Malley, S. Jung, 2014, PloS one.

Characteristic Direction Approach to Identify Differentially Expressed Genes

Kevin S. Hu, Edward Y. Chen, Neil R. Clark, 2013, 1307.8366.

Renoprotective effect of combined inhibition of angiotensin-converting enzyme and histone deacetylase.

Edward Y. Chen, E. Chen, Avi Ma’ayan, 2013, Journal of the American Society of Nephrology : JASN.

ChEA2: Gene-Set Libraries from ChIP-X Experiments to Decode the Transcription Regulome

Avi Ma'ayan, Christopher M. Tan, Edward Y. Chen, 2013, CD-ARES.

Sets2Networks: network inference from repeated observations of sets

Avi Ma'ayan, Ruth Dannenfelser, Christopher M. Tan, 2012, BMC Systems Biology.

Recovering Protein-Protein and Domain-Domain Interactions from Aggregation of IP-MS Proteomics of Coregulator Complexes

Ravi Iyengar, Avi Ma'ayan, Timothy Cardozo, 2011, PLoS Comput. Biol..

Principle Angle Enrichment Analysis (PAEA): Dimensionally reduced multivariate gene set enrichment analysis tool

Avi Ma'ayan, Matthew R. Jones, Zichen Wang, 2015, 2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Network2Canvas: network visualization on a canvas with enrichment analysis

Edward Y. Chen, E. Chen, Avi Ma’ayan, 2013, Bioinform..

Induction of a hemogenic program in mouse fibroblasts.

Avi Ma’ayan, J. Kovacic, C. Schaniel, 2013, Cell stem cell.

Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool

Avi Ma'ayan, Zichen Wang, Christopher M. Tan, 2013, BMC Bioinformatics.

The characteristic direction: a geometrical approach to identify differentially expressed genes

Avi Ma'ayan, Kevin S. Hu, Edward Y. Chen, 2014, BMC Bioinformatics.

Large Collection of Diverse Gene Set Search Queries Recapitulate Known Protein-Protein Interactions and Gene-Gene Functional Associations pdf

Avi Ma'ayan, Neil R. Clark, Avi Ma’ayan, 2016, ArXiv.

Genes2FANs: connecting genes through functional association networks

Avi Ma'ayan, Ruth Dannenfelser, Neil R. Clark, 2012, BMC Bioinformatics.