Paul Bertone

发表

HTqPCR: high-throughput analysis and visualization of quantitative real-time PCR data in R

Heidi Dvinge, Paul Bertone, Paul Bertone, 2009, Bioinform..

Fast Optimal Genome Tiling with Applications to Microarray Design and Homology Search

Ming-Yang Kao, Mark Gerstein, Piotr Berman, 2002, WABI.

Fast Optimal Genome Tiling with Applications to Microarray Design and Homology Search

Ming-Yang Kao, Mark Gerstein, Piotr Berman, 2002, WABI.

SPINE: an integrated tracking database and data mining approach for identifying feasible targets in high-throughput structural proteomics

Mark Gerstein, Deyou Zheng, Yuval Kluger, 2001, Nucleic Acids Res..

ExpressYourself: a modular platform for processing and visualizing microarray data

Mark Gerstein, Nicholas M. Luscombe, Nathaniel Echols, 2003, Nucleic Acids Res..

PeakAnalyzer: Genome-wide annotation of chromatin binding and modification loci

Heidi Dvinge, Paul Bertone, Mali Salmon-Divon, 2010, BMC Bioinformatics.

Analysis of Genomic Tiling Microarrays for Transcript Mapping and the Identification of Transcription Factor Binding Sites

Mark Gerstein, Michael Snyder, Paul Bertone, 2005, BSB.

Towards practical, high-capacity, low-maintenance information storage in synthesized DNA

Ewan Birney, Christophe Dessimoz, Siyuan Chen, 2013, Nature.

Integrated analysis of single-cell embryo data yields a unified transcriptome signature for the human preimplantation epiblast

Ge Guo, Paul Bertone, Jennifer Nichols, 2017, bioRxiv.

Digital transcriptome profiling of normal and glioblastoma-derived neural stem cells identifies genes associated with patient survival

Paul Bertone, Stefan H Stricker, Steven M Pollard, 2012, Genome Medicine.

Advances in functional protein microarray technology

Paul Bertone, M. Snyder, Paul Bertone, 2005, The FEBS journal.

An integrated approach for finding overlooked genes in yeast

Kei-Hoi Cheung, Nathaniel Echols, Mark B. Gerstein, 2002, Nature Biotechnology.

Integrated analysis of single-cell embryo data yields a unified transcriptome signature for the human pre-implantation epiblast

Ge Guo, Paul Bertone, Jennifer Nichols, 2017, Development.

Mapping organelle proteins and protein complexes in Drosophila melanogaster.

Kathryn S Lilley, Heidi Dvinge, Paul Bertone, 2009, Journal of proteome research.

Genome-wide Analysis Reveals MOF as a Key Regulator of Dosage Compensation and Gene Expression in Drosophila

Nicholas M. Luscombe, Juan M. Vaquerizas, Paul Bertone, 2008, Cell.

Genome-wide characterization of Foxa2 targets reveals upregulation of floor plate genes and repression of ventrolateral genes in midbrain dopaminergic progenitors

Johan Ericson, Mali Salmon-Divon, Heidi Dvinge, 2012, Development.

Inheritance of low-frequency regulatory SNPs and a rare null mutation in exon-junction complex subunit RBM8A causes TAR

Ana Cvejic, Panos Deloukas, Matthew E Hurles, 2012, Nature Genetics.

Glioblastoma Stem Cells Respond to Differentiation Cues but Fail to Undergo Commitment and Terminal Cell-Cycle Arrest

Andrew E. Teschendorff, Stephan Beck, Harry Bulstrode, 2015, Stem cell reports.

Citrullination regulates pluripotency and histone H1 binding to chromatin

Remco Loos, Paul Bertone, Tony Kouzarides, 2014, Nature.

Molecular fossils in the human genome: identification and analysis of the pseudogenes in chromosomes 21 and 22.

Mark Gerstein, Nathaniel Echols, Paul Bertone, 2002, Genome research.

Nuclear Architecture Organized by Rif1 Underpins the Replication-Timing Program

Wolfgang Huber, Thomas Manke, Remco Loos, 2016, Molecular cell.

Toward practical high-capacity low-maintenance storage of digital information in synthesised DNA

Ewan Birney, Christophe Dessimoz, Botond Sipos, 2013 .

SPINE 2: a system for collaborative structural proteomics within a federated database framework.

Mark Gerstein, Nathaniel Echols, Gaetano T Montelione, 2003, Nucleic acids research.

Neural lineage induction reveals multi-scale dynamics of 3D chromatin organization

Wolfgang Huber, Felix A. Klein, Simon Anders, 2014, bioRxiv.

Global changes in STAT target selection and transcription regulation upon interferon treatments.

Mark Gerstein, Paul Bertone, Thomas E. Royce, 2005, Genes & development.

Transcriptional diversity during lineage commitment of human blood progenitors

Randy J. Read, William J. Astle, Paul Flicek, 2014, Science.

Target hub proteins serve as master regulators of development in yeast.

Mark Gerstein, Haiyuan Yu, Paul Bertone, 2006, Genes & development.

CREB Binds to Multiple Loci on Human Chromosome 22

Mark Gerstein, Paul Bertone, Thomas E Royce, 2004, Molecular and Cellular Biology.

Applications of DNA tiling arrays to experimental genome annotation and regulatory pathway discovery

Mark Gerstein, Paul Bertone, M. Gerstein, 2005, Chromosome Research.

Multi-species microarrays reveal the effect of sequence divergence on gene expression profiles.

Mark Gerstein, Scott A. Rifkin, Paul Bertone, 2005, Genome research.

Issues in the analysis of oligonucleotide tiling microarrays for transcript mapping.

Mark Gerstein, Paul Bertone, Thomas E. Royce, 2005, Trends in genetics : TIG.

The Nucleosome Remodeling and Deacetylation Complex Modulates Chromatin Structure at Sites of Active Transcription to Fine-Tune Gene Expression

Susanne Bornelöv, Remco Loos, Brian Hendrich, 2018, Molecular cell.

Identification of pseudogenes in the Drosophila melanogaster genome.

Mark Gerstein, Zhaolei Zhang, Paul Bertone, 2003, Nucleic acids research.

Distribution of NF-kappaB-binding sites across human chromosome 22.

Mark Gerstein, Paul Bertone, Thomas E. Royce, 2003, Proceedings of the National Academy of Sciences of the United States of America.

Modeling of C/EBPalpha mutant acute myeloid leukemia reveals a common expression signature of committed myeloid leukemia-initiating cells.

Heidi Dvinge, Paul Bertone, Daniel G Tenen, 2008, Cancer cell.

Comprehensive analysis of amino acid and nucleotide composition in eukaryotic genomes, comparing genes and pseudogenes.

Mark Gerstein, Zhaolei Zhang, Nathaniel Echols, 2002, Nucleic acids research.