Morgan C. Giddings

发表

Ultra-Structure database design methodology for managing systems biology data and analyses

Bradley M. Hemminger, Jeffrey G. Long, Christopher W. Maier, 2009, BMC Bioinformatics.

In response to "On E-value for tandem MS scoring schemes"

Morgan C. Giddings, Jainab Khatun, 2008, Bioinform..

Baking a mass-spectrometry data PIE with McMC and simulated annealing: predicting protein post-translational modifications from integrated top-down and bottom-up data

Morgan C. Giddings, Stuart R. Jefferys, S. Jefferys, 2011, Bioinform..

Incorporating sequence information into the scoring function: a hidden Markov model for improved peptide identification

Morgan C. Giddings, Jainab Khatun, Eric Hamlett, 2008, Bioinform..

On the Process of Becoming a Great Scientist

Morgan C. Giddings, 2008, PLoS Comput. Biol..

Landscape of transcription in human cells

Nadav S. Bar, Pedro G. Ferreira, Morgan C. Giddings, 2012, Nature.

An Integrated Encyclopedia of DNA Elements in the Human Genome

Raymond K. Auerbach, William Stafford Noble, Stephen C. J. Parker, 2012, Nature.

ShapeFinder: a software system for high-throughput quantitative analysis of nucleic acid reactivity information resolved by capillary electrophoresis.

Morgan C. Giddings, N. Guex, K. Weeks, 2008, RNA.

Defining functional DNA elements in the human genome

Morgan C. Giddings, E. Birney, M. Gerstein, 2014, Proceedings of the National Academy of Sciences.

A User's Guide to the Encyclopedia of DNA Elements (ENCODE)

Raymond K. Auerbach, William Stafford Noble, Stephen C. J. Parker, 2011, PLoS biology.

Long noncoding RNAs are rarely translated in two human cell lines

James B. Brown, Morgan C. Giddings, P. Bickel, 2012, Genome research.

High-Throughput SHAPE Analysis Reveals Structures in HIV-1 Genomic RNA Strongly Conserved across Distinct Biological States

Morgan C. Giddings, N. Guex, D. Mathews, 2008, PLoS biology.

Peppy: proteogenomic search software.

Morgan C. Giddings, Brian A. Risk, Wendy J Spitzer, 2013, Journal of proteome research.

Whole human genome proteogenomic mapping for ENCODE cell line data: identifying protein-coding regions

Morgan C. Giddings, Jainab Khatun, Xian Chen, 2013, BMC Genomics.

A peptide-spectrum scoring system based on ion alignment, intensity, and pair probabilities.

Morgan C. Giddings, Brian A. Risk, N. Edwards, 2013, Journal of proteome research.

An Agent-Based Model of Signal Transduction in Bacterial Chemotaxis

Morgan C. Giddings, Robert B. Bourret, M. Parker, 2010, PloS one.

The Development of Ciprofloxacin Resistance in Pseudomonas aeruginosa Involves Multiple Response Stages and Multiple Proteins

Morgan C. Giddings, Jainab Khatun, M. Wolfgang, 2010, Antimicrobial Agents and Chemotherapy.

GOFAST: an integrated approach for efficient and comprehensive membrane proteome analysis.

Christopher W. Maier, Morgan C. Giddings, Jainab Khatun, 2012, Analytical chemistry.

Tracking the evolution of alternatively spliced exons within the Dscam family

Morgan C. Giddings, Mack E. Crayton, T. Vision, 2006, BMC Evolutionary Biology.

Landscape of transcription in human cells

Nadav S. Bar, Pedro G. Ferreira, Morgan C. Giddings, 2012, Nature.

Automated data integration and determination of posttranslational modifications with the protein inference engine.

Morgan C. Giddings, Stuart R Jefferys, Morgan C Giddings, 2011, Methods in molecular biology.

Agent-based modeling of competence phenotype switching in Bacillus subtilis

Morgan C. Giddings, Morgan C Giddings, Suzy M. Stiegelmeyer, 2013, Theoretical Biology and Medical Modelling.

Mapping phosphoproteins in Mycoplasma genitalium and Mycoplasma pneumoniae

Morgan C. Giddings, C. Hutchison, Hsun-Cheng Su, 2007, BMC Microbiology.

Stochastic model of BKPy Virus replication and assembly

Morgan C. Giddings, Suzy M. Stiegelmeyer, J. Webster-Cyriaque, 2019, bioRxiv.

Using GFS to Identify Encoding Genomic Loci from Protein Mass Spectral Data

Morgan C. Giddings, Mark R Holmes, 2008, Current protocols in bioinformatics.

High-accuracy peptide mass fingerprinting using peak intensity data with machine learning.

Morgan C. Giddings, Dongmei Yang, Eric Hamlett, 2008, Journal of proteome research.

Comparative genome analysis of ciprofloxacin-resistant Pseudomonas aeruginosa reveals genes within newly identified high variability regions associated with drug resistance development.

Morgan C. Giddings, Dona M. Kanavy, Jainab Khatun, 2013, Microbial drug resistance.

Fragmentation characteristics of collision-induced dissociation in MALDI TOF/TOF mass spectrometry.

Morgan C. Giddings, Jainab Khatun, Morgan C Giddings, 2007, Analytical chemistry.

Influence of nucleotide identity on ribose 2'-hydroxyl reactivity in RNA.

Morgan C. Giddings, Katherine E Deigan, K. Weeks, 2009, RNA.

GFSWeb: a web tool for genome-based identification of proteins from mass spectrometric samples.

Morgan C. Giddings, M. Wisz, Mark R Holmes, 2004, Journal of Proteome Research.

Tracking the evolution of alternatively spliced exons within the Dscam family

Morgan C. Giddings, Mack E. Crayton, T. Vision, 2006, BMC Evolutionary Biology.

Defining functional DNA elements in the human genome

Morgan C. Giddings, E. Birney, M. Gerstein, 2014, Proceedings of the National Academy of Sciences.

Mapping phosphoproteins in Mycoplasma genitalium and Mycoplasma pneumoniae

Morgan C. Giddings, C. Hutchison, Hsun-Cheng Su, 2007, BMC Microbiology.

Reply to Brunet and Doolittle: Both selected effect and causal role elements can influence human biology and disease

Morgan C. Giddings, E. Birney, M. Gerstein, 2014, Proceedings of the National Academy of Sciences.