Nancy F. Hansen

发表

A robust benchmark for detection of germline large deletions and insertions

Ken Chen, Adam M. Phillippy, Iman Hajirasouliha, 2020, Nature Biotechnology.

Evaluation of variant detection software for pooled next-generation sequence data

Howard Huang, Nancy F. Hansen, James C. Mullikin, 2015, BMC Bioinformatics.

A robust benchmark for germline structural variant detection

Sergey Koren, Adam M. Phillippy, Iman Hajirasouliha, 2019, bioRxiv.

Shimmer: detection of genetic alterations in tumors using next-generation sequence data

Lan Mei, Nancy F. Hansen, James C. Mullikin, 2013, Bioinform..

Whole-Exome Sequencing Identifies Homozygous AFG3L2 Mutations in a Spastic Ataxia-Neuropathy Syndrome Linked to Mitochondrial m-AAA Proteases

Anthony Sandler, Nancy F. Hansen, Jamie K. Teer, 2011, PLoS genetics.

Telomere-to-telomere assembly of a complete human X chromosome

Sergey Koren, Adam M. Phillippy, Joel Armstrong, 2019, bioRxiv.

Exome sequencing of serous endometrial tumors identifies recurrent somatic mutations in chromatin-remodeling and ubiquitin ligase complex genes

Dennis C. Sgroi, Nancy F. Hansen, James C. Mullikin, 2016 .

Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana

Paul Shinn, Andre Marziali, William C. Nierman, 2000, Nature.

TTC21B contributes both causal and modifying alleles across the ciliopathy spectrum

Colin A. Johnson, Nancy F. Hansen, R. Gibbs, 2011, Nature Genetics.

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

William Stafford Noble, Nancy R. Zhang, Stephen C. J. Parker, 2007, Nature.

The Sleep Inbred Panel, a Collection of Inbred Drosophila melanogaster with Extreme Long and Short Sleep Duration

Nancy F. Hansen, N. Hansen, Susan T. Harbison, 2018, G3: Genes, Genomes, Genetics.

Selection for long and short sleep duration in Drosophila melanogaster reveals the complex genetic network underlying natural variation in sleep

Nancy F. Hansen, N. Hansen, Susan T. Harbison, 2017, PLoS genetics.

Mapping and sequencing of structural variation from eight human genomes

Joshua M. Korn, Nancy F. Hansen, D. Altshuler, 2008, Nature.

Accurate Whole Human Genome Sequencing using Reversible Terminator Chemistry

Nancy F. Hansen, Lisa J. Murray, Phillip J. Black, 2008, Nature.

Exome sequencing of serous endometrial tumors identifies recurrent somatic mutations in chromatin-remodeling and ubiquitin ligase complex genes

Nancy F. Hansen, J. Mullikin, N. Hansen, 2012, Nature Genetics.

The ENCODE (ENCyclopedia Of DNA Elements) Project

Paul T. Groth, William Stafford Noble, Colin N. Dewey, 2004, Science.

The complete sequence of a human genome

Aaron M. Streets, Ira M. Hall, Nathan D. Olson, 2021, bioRxiv.

KLF3 and PAX6 are candidate driver genes in late-stage, MSI-hypermutated endometrioid endometrial carcinomas

Nancy F. Hansen, N. Hansen, M. Merino, 2021, medRxiv.

Empirical Analysis of Transcriptional Activity in the Arabidopsis Genome

Joseph M. Dale, Nancy F. Hansen, Ronald W. Davis, 2003, Science.

A Draft Sequence of the Neandertal Genome

Philip L. F. Johnson, Nancy F. Hansen, Adrian W. Briggs, 2010, Science.

The complete sequence of a human Y chromosome

William T. Harvey, Nathan D. Olson, Nancy F. Hansen, 2023, bioRxiv.

Exome sequencing as a diagnostic tool in a case of undiagnosed juvenile-onset GM1-gangliosidosis

Nancy F. Hansen, J. Mullikin, N. Hansen, 2012, Neurology.

gangliosidosis 1 juvenile-onset GM Exome sequencing as a diagnostic tool in a case of undiagnosed

Nancy F. Hansen, K. F. Fajardo, J. Mullikin, 2012 .

Personalized genomic medicine: lessons from the exome.

Nancy F. Hansen, J. Mullikin, N. Hansen, 2011, Molecular genetics and metabolism.

Systematic comparison of three genomic enrichment methods for massively parallel DNA sequencing.

Jamie K Teer, Leslie G Biesecker, Nancy F. Hansen, 2010, Genome research.

Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome.

Colin N. Dewey, Richard A. Moore, James B. Brown, 2007, Genome research.

Genomic evidence for a complete sexual cycle in Candida albicans

Nancy F. Hansen, Ronald W. Davis, N. Hansen, 2001, Proceedings of the National Academy of Sciences of the United States of America.

A complete reference genome improves analysis of human genetic variation

Ryan M. Layer, Nathan D. Olson, Nancy F. Hansen, 2021, bioRxiv.

Title: A complete human reference genome improves variant calling for population and clinical genomics

Ryan M. Layer, Nathan D. Olson, Nancy F. Hansen, 2021 .

The ClinSeq Project: piloting large-scale genome sequencing for research in genomic medicine.

Nancy F. Hansen, Alexander F. Wilson, J. Mullikin, 2009, Genome research.

Long-read mapping to repetitive reference sequences using Winnowmap2

Nancy F. Hansen, S. Koren, A. Phillippy, 2022, Nature Methods.

Compound heterozygosity for loss-of-function lysyl-tRNA synthetase mutations in a patient with peripheral neuropathy.

Nancy F. Hansen, J. Lupski, J. Mullikin, 2010, American journal of human genetics.

Effort required to finish shotgun-generated genome sequences differs significantly among vertebrates

Nancy F. Hansen, Eric D Green, Nancy F Hansen, 2010, BMC Genomics.

Light whole genome sequence for SNP discovery across domestic cat breeds

Nancy F. Hansen, J. Mullikin, S. O’Brien, 2010, BMC Genomics.

Variant Calling From Next Generation Sequence Data

Nancy F. Hansen, Nancy F Hansen, N. Hansen, 2016, Statistical Genomics.

The NIMH Multisite HIV Prevention Trial: reducing HIV sexual risk behavior. The National Institute of Mental Health (NIMH) Multisite HIV Prevention Trial Group.

Nancy F. Hansen, A. O'Leary, N. Hansen, 1998, Science.

Comparative clinical and genomic analysis of neurofibromatosis type 2-associated cranial and spinal meningiomas

Nancy F. Hansen, J. Mullikin, N. Hansen, 2020, Scientific Reports.

The FOXA2 transcription factor is frequently somatically mutated in uterine carcinosarcomas and carcinomas

Nancy F. Hansen, J. Mullikin, N. Hansen, 2018, Cancer.

The primacy of NF1 loss as the driver of tumorigenesis in neurofibromatosis type 1-associated plexiform neurofibromas

Nancy F. Hansen, Stephen W. Hartley, J. Mullikin, 2017, Oncogene.

Comparative analyses of multi-species sequences from targeted genomic regions

Nancy F. Hansen, J. W. Thomas, D. Haussler, 2003, Nature.

Mutational Signatures of De-Differentiation in Functional Non-Coding Regions of Melanoma Genomes

Stephen C. J. Parker, Nancy F. Hansen, T. Furey, 2012, PLoS genetics.

A long read mapping method for highly repetitive reference sequences

Sergey Koren, Adam M. Phillippy, Chirag Jain, 2020, bioRxiv.

Predisposition to Cancer Caused by Genetic and Functional Defects of Mammalian Atad5

Nancy F. Hansen, Lana M. Pollock, T. Wolfsberg, 2011, PLoS genetics.

Somatic mutational landscape of AML with inv(16) or t(8;21) identifies patterns of clonal evolution in relapse leukemia

Nancy F. Hansen, M. Caligiuri, C. Bloomfield, 2015, Leukemia.

Shimmer: detection of genetic alterations in tumors using next-generation sequence data

Nancy F. Hansen, J. Mullikin, J. Gartner, 2013, Bioinform..

Sequencing of Candidate Chromosome Instability Genes in Endometrial Cancers Reveals Somatic Mutations in ESCO1, CHTF18, and MRE11A

Nancy F. Hansen, Lana M. Pollock, J. Mullikin, 2013, PloS one.

Low mutation burden and frequent loss of CDKN2A/B and SMARCA2, but not PRC2, define pre-malignant neurofibromatosis type 1-associated atypical neurofibromas.

Nancy F. Hansen, J. Mullikin, N. Hansen, 2019, Neuro-oncology.

Incidental Medical Information in Whole-Exome Sequencing

Nancy F. Hansen, J. Mullikin, N. Hansen, 2012, Pediatrics.

Massively parallel sequencing of exons on the X chromosome identifies RBM10 as the gene that causes a syndromic form of cleft palate.

Jamie K Teer, Leslie G Biesecker, Nancy F. Hansen, 2010, American journal of human genetics.

Exome sequencing and SNP analysis detect novel compound heterozygosity in fatty acid hydroxylase-associated neurodegeneration

Murat Sincan, Nancy F. Hansen, William A Gahl, 2011, European Journal of Human Genetics.

Admixture mapping identifies genetic regions associated with blood pressure phenotypes in African Americans

Nancy F. Hansen, C. Rotimi, J. Mullikin, 2020, PloS one.

An enhancer polymorphism at the cardiomyocyte intercalated disc protein NOS1AP locus is a major regulator of the QT interval.

Nancy F. Hansen, E. Boerwinkle, M. Ross, 2014, American journal of human genetics.

Mutational analysis of the tyrosine kinome in serous and clear cell endometrial cancer uncovers rare somatic mutations in TNK2 and DDR1

Nancy F. Hansen, T. Wolfsberg, J. Mullikin, 2014, BMC Cancer.

Gene-Based Sequencing Identifies Lipid-Influencing Variants with Ethnicity-Specific Effects in African Americans

Nancy F. Hansen, C. Rotimi, A. Adeyemo, 2014, PLoS genetics.

Neuroanatomic, epigenetic, and genetic differences in monozygotic twins discordant for Attention Deficit Hyperactivity Disorder

Nancy F. Hansen, N. Hansen, L. Elnitski, 2017, Molecular Psychiatry.

iPSCs and fibroblast subclones from the same fibroblast population contain comparable levels of sequence variations

Nancy F. Hansen, Brian W Davis, James C Mullikin, 2017, Proceedings of the National Academy of Sciences.

Low incidence of DNA sequence variation in human induced pluripotent stem cells generated by nonintegrating plasmid expression.

Yutao Du, Linzhao Cheng, Nancy F. Hansen, 2012, Cell stem cell.

Gray platelet syndrome: natural history of a large patient cohort and locus assignment to chromosome 3p.

Nancy F. Hansen, J. Mullikin, N. Hansen, 2010, Blood.

locus assignment to chromosome 3p Gray platelet syndrome: natural history of a large patient cohort and

Nancy F. Hansen, J. Mullikin, N. Hansen, 2011 .