James C. Mullikin

发表

A robust benchmark for detection of germline large deletions and insertions

Ken Chen, Adam M. Phillippy, Iman Hajirasouliha, 2020, Nature Biotechnology.

Interactive algorithms for rapid enumeration of hybridization signals in individual whole-cell nuclei inside intact-tissue specimens

Joe W. Gray, Stephen J. Lockett, Damir Sudar, 1995, Electronic Imaging.

QoRTs: a comprehensive toolset for quality control and data processing of RNA-Seq experiments

Stephen Hartley, James C. Mullikin, Stephen W. Hartley, 2015, BMC Bioinformatics.

Detection and visualization of differential splicing in RNA-Seq data with JunctionSeq

James C. Mullikin, Stephen W. Hartley, J. Mullikin, 2015, Nucleic acids research.

Evaluation of variant detection software for pooled next-generation sequence data

Howard Huang, Nancy F. Hansen, James C. Mullikin, 2015, BMC Bioinformatics.

A robust benchmark for germline structural variant detection

Sergey Koren, Adam M. Phillippy, Iman Hajirasouliha, 2019, bioRxiv.

VarSifter: Visualizing and analyzing exome-scale sequence variation data on a desktop computer

Eric D. Green, James C. Mullikin, Leslie G. Biesecker, 2012, Bioinform..

Methods for CCD camera characterization

Ian T. Young, Lucas J. van Vliet, Frank R. Boddeke, 1994, Electronic Imaging.

StellaBase: The Nematostella vectensis Genomics Database

Joseph F. Ryan, Daniel Rokhsar, James C. Mullikin, 2005, Nucleic Acids Res..

The vector distance transform in two and three dimensions

James C. Mullikin, J. Mullikin, 1992, CVGIP Graph. Model. Image Process..

Shimmer: detection of genetic alterations in tumors using next-generation sequence data

Lan Mei, Nancy F. Hansen, James C. Mullikin, 2013, Bioinform..

A probabilistic approach for long read-length DNA sequence analysis

James C. Mullikin, C. G. Molina, 2002, Proceedings of the 12th IEEE Workshop on Neural Networks for Signal Processing.

ssahaSNP - a polymorphism detection tool on a whole genome scale

Mario Cáccamo, Zemin Ning, James C. Mullikin, 2005, 2005 IEEE Computational Systems Bioinformatics Conference - Workshops (CSBW'05).

Exome sequencing: the sweet spot before whole genomes

James C. Mullikin, Jamie K. Teer, J. Mullikin, 2010, Human molecular genetics.

Great ape genetic diversity and population history

Arcadi Navarro, Thomas Mailund, Jaume Bertranpetit, 2013, Nature.

Sequences, Annotation and Single Nucleotide Polymorphism of the Major Histocompatibility Complex in the Domestic Cat

James C. Mullikin, Robert Stephens, Stephen J. O'Brien, 2008, PloS one.

Human genome sequence variation and the influence of gene history, mutation and recombination

Eric S. Lander, Gil McVean, James C. Mullikin, 2002, Nature Genetics.

Gene-Specific Substitution Profiles Describe the Types and Frequencies of Amino Acid Changes during Antibody Somatic Hypermutation

Peter D. Kwong, John R. Mascola, James C. Mullikin, 2017, Front. Immunol..

A Defined Zebrafish Line for High-Throughput Genetics and Genomics: NHGRI-1

James C. Mullikin, Matthew C. LaFave, Shawn M. Burgess, 2014, Genetics.

Maturation and Diversity of the VRC01-Antibody Lineage over 15 Years of Chronic HIV-1 Infection

Young Do Kwon, Tongqing Zhou, Baoshan Zhang, 2015, Cell.

Telomere-to-telomere assembly of a complete human X chromosome

Sergey Koren, Adam M. Phillippy, Joel Armstrong, 2019, bioRxiv.

Enhanced Potency of a Broadly Neutralizing HIV-1 Antibody In Vitro Improves Protection against Lentiviral Infection In Vivo

Young Do Kwon, Mario Roederer, Tongqing Zhou, 2014, Journal of Virology.

Exome sequencing of serous endometrial tumors identifies recurrent somatic mutations in chromatin-remodeling and ubiquitin ligase complex genes

Dennis C. Sgroi, Nancy F. Hansen, James C. Mullikin, 2016 .

Surface area estimation of digitized planes

Piet W. Verbeek, James C. Mullikin, J. Mullikin, 1993 .

Assessing the reproducibility of exome copy number variations predictions

Celine S. Hong, Larry N. Singh, James C. Mullikin, 2016, Genome Medicine.

Focused Evolution of HIV-1 Neutralizing Antibodies Revealed by Structures and Deep Sequencing

Mario Roederer, Tongqing Zhou, Gary J. Nabel, 2011, Science.

The bonobo genome compared with the chimpanzee and human genomes

Sergey Koren, Thomas Mailund, Asger Hobolth, 2012, Nature.

The mosaic structure of variation in the laboratory mouse genome

Eric S. Lander, Claire M. Wade, Michael C. Zody, 2002, Nature.

Single-molecule sequencing to track plasmid diversity of hospital-associated carbapenemase-producing Enterobacteriaceae

Jonas Korlach, David K. Henderson, James C. Mullikin, 2014, Science Translational Medicine.

Mining the antibodyome for HIV-1–neutralizing antibodies with next-generation sequencing and phylogenetic pairing of heavy/light chains

Baoshan Zhang, Peter D. Kwong, John R. Mascola, 2013, Proceedings of the National Academy of Sciences.