Shifu Chen

fastp: an ultra-fast all-in-one FASTQ preprocessor

Jia Gu, Shifu Chen, Yanqing Zhou, 2018, bioRxiv.

AfterQC: automatic filtering, trimming, error removing and quality control for fastq data

Jia Gu, Tanxiao Huang, Mingyan Xu, 2017, BMC Bioinformatics.

A computational toolset for rapid identification of SARS-CoV-2, other viruses and microorganisms from sequencing data

Zhicheng Li, Shifu Chen, Changshou He, 2020, Briefings in bioinformatics.

A computational toolset for rapid identification of SARS-CoV-2, other viruses and microorganisms from sequencing data

Zhicheng Li, Shifu Chen, Changshou He, 2020, bioRxiv.

MutScan: fast detection and visualization of target mutations by scanning FASTQ data

Tiexiang Wen, Jia Gu, Hong Li, 2018, BMC Bioinformatics.

AfterQC: automatic filtering, trimming, error removing and quality control for fastq data

Yue Han, Jia Gu, Shifu Chen, 2017, BMC Bioinformatics.

Gencore: an efficient tool to generate consensus reads for error suppressing and duplicate removing of NGS data

Jia Gu, Yun Xu, Zhihua Liu, 2018, BMC Bioinformatics.

Ultrafast one‐pass FASTQ data preprocessing, quality control, and deduplication using fastp

Shifu Chen, 2023, iMeta.

Segmentation of abdomen MR images using kernel graph cuts with shape priors

Yaoqin Xie, Tiexiang Wen, Jia Gu, 2013, BioMedical Engineering OnLine.

SeqMaker: A next generation sequencing simulator with variations, sequencing errors and amplification bias integrated

Yue Han, Jia Gu, Jingjing Hu, 2016, 2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).