D. Vidović

发表

Anti-Diabetic Actions of a Non-Agonist PPARγ Ligand Blocking Cdk5-Mediated Phosphorylation

Scott A. Busby, M. J. Chalmers, Alexander S. Banks, 2011, Nature.

A multi-omic analysis of MCF10A cells provides a resource for integrative assessment of ligand-mediated molecular and phenotypic responses

Mark A. Dane, Laura M. Heiser, Daniel J. B. Clarke, 2022, Communications Biology.

A LINCS microenvironment perturbation resource for integrative assessment of ligand-mediated molecular and phenotypic responses

Mark A. Dane, Laura M. Heiser, Sean M. Gross, 2021, bioRxiv.

Discovery of novel small molecule cell type-specific enhancers of NF-kappaB nuclear translocation.

D. Vidovic, D. Landry, S. Schürer, 2009, Bioorganic & medicinal chemistry letters.

Suppression of TH17 Differentiation and Autoimmunity by a Synthetic ROR Ligand

Dušica Vidović, William R. Roush, Philippe Nuhant, 2011, Nature.

Building Concordant Ontologies for Drug Discovery

Ubbo Visser, Vasileios Stathias, Amar Koleti, 2016, ICBO/BioCreative.

Pharos: Collating protein information to shed light on the druggable genome

Rajarshi Guha, Tudor I. Oprea, Larry A. Sklar, 2016, Nucleic Acids Res..

LINCS Data Portal 2.0: next generation access point for perturbation-response signatures

Vasileios Stathias, Amar Koleti, Raymond Terryn, 2019, Nucleic Acids Res..

TCRD and Pharos 2021: mining the human proteome for disease biology

Anton Simeonov, Tudor I. Oprea, Noel Southall, 2020, Nucleic Acids Res..

Drug target ontology to classify and integrate drug discovery data

Tudor I. Oprea, Stephen L. Mathias, Jeremy J. Yang, 2017, bioRxiv.

A library of induced pluripotent stem cells from clinically well-characterized, diverse healthy human individuals

M. Mahajan, E. Schadt, R. Iyengar, 2020, bioRxiv.

Connecting omics signatures and revealing biological mechanisms with iLINCS

Nicholas A. Clark, Daniel J. B. Clarke, D. Vidovic, 2022, Nature Communications.

Sustainable data and metadata management at the BD2K-LINCS Data Coordination and Integration Center

Vasileios Stathias, Amar Koleti, Dušica Vidović, 2018, Scientific Data.

The Library of Integrated Network-Based Cellular Signatures NIH Program: System-Level Cataloging of Human Cells Response to Perturbations.

Ravi Iyengar, Vasileios Stathias, Amar Koleti, 2017, Cell systems.

Data Portal for the Library of Integrated Network-based Cellular Signatures (LINCS) program: integrated access to diverse large-scale cellular perturbation response data

Vasileios Stathias, Amar Koleti, Raymond Terryn, 2017, Nucleic Acids Res..

Connecting omics signatures of diseases, drugs, and mechanisms of actions with iLINCS

Vasileios Stathias, Amar Koleti, Mario Medvedovic, 2019, bioRxiv.

Epigenetic Pathways and Glioblastoma Treatment: Insights From Signaling Cascades

Bryce K. Allen, D. Vidovic, A. Capobianco, 2015, Journal of cellular biochemistry.

Comparison of Electronegative Filtration to Magnetic Bead-Based Concentration and V2G-qPCR to RT-qPCR for Quantifying Viral SARS-CoV-2 RNA from Wastewater

D. Vidovic, H. Solo-Gabriele, G. Grills, 2022, ACS ES&T Water.

Distinct functional and conformational states of the human lymphoid tyrosine phosphatase catalytic domain can be targeted by choice of the inhibitor chemotype

Caty Chung, Stephan C. Schürer, Dusica Vidovic, 2011, J. Comput. Aided Mol. Des..

Novel Kinase Inhibitors by Reshuffling Ligand Functionalities Across the Human Kinome

Stephan C. Schürer, Steven M. Muskal, Dusica Vidovic, 2012, J. Chem. Inf. Model..

Pharos 2023: an integrated resource for the understudied human proteome

Tudor I. Oprea, Karlie R. Sharma, Keith J. Kelleher, 2022, Nucleic Acids Res..

Relationships between SARS-CoV-2 in Wastewater and COVID-19 Clinical Cases and Hospitalizations, with and without Normalization against Indicators of Human Waste

D. Vidovic, H. Solo-Gabriele, G. Grills, 2022, ACS ES&T water.

Large-scale integration of small molecule-induced genome-wide transcriptional responses, Kinome-wide binding affinities and cell-growth inhibition profiles reveal global trends characterizing systems-level drug action

D. Vidovic, S. Schürer, Amar Koleti, 2014, Front. Genet..

Drug specific transcriptomic signatures in healthy human subject iPSC derived cardiomyocytes

R. Sebra, J. Goldfarb, M. Birtwistle, 2021 .

Screening of cell cycle fusion proteins to identify kinase signaling networks

D. Vidovic, N. Ayad, Scott Simanski, 2015, Cell cycle.

Metadata Standard and Data Exchange Specifications to Describe, Model, and Integrate Complex and Diverse High-Throughput Screening Data from the Library of Integrated Network-based Cellular Signatures (LINCS)

Amar Koleti, Dušica Vidović, Caty Chung, 2014, Journal of biomolecular screening.

Inhibition of lymphoid tyrosine phosphatase by benzofuran salicylic acids.

Caty Chung, Stephan C Schürer, Yuli Xie, 2011, Journal of medicinal chemistry.

Lessons learned from SARS-CoV-2 measurements in wastewater

H. Solo-Gabriele, G. Grills, Sion L. Williams, 2021, Science of The Total Environment.

Predicting COVID-19 cases using SARS-CoV-2 RNA in air, surface swab and wastewater samples

H. Solo-Gabriele, G. Grills, Sion L. Williams, 2022, Science of The Total Environment.

Knowledge-based characterization of similarity relationships in the human protein-tyrosine phosphatase family for rational inhibitor design.

Stephan C Schürer, S. Schürer, Dusica Vidović, 2009, Journal of medicinal chemistry.

Discovery of potent non-urea inhibitors of soluble epoxide hydrolase.

D. Vidovic, B. Hammock, C. Morisseau, 2009, Bioorganic & medicinal chemistry letters.

A Combined Ligand‐ and Structure‐Based Virtual Screening Protocol Identifies Submicromolar PPARγ Partial Agonists

Scott A. Busby, P. Griffin, D. Vidovic, 2011, ChemMedChem.

Identification of N-(quinolin-8-yl)benzenesulfonamides as agents capable of down-regulating NFkappaB activity within two separate high-throughput screens of NFkappaB activation.

L. Staudt, R. Davis, Noel Southall, 2008, Bioorganic & medicinal chemistry letters.

Monkeypox viral nucleic acids detected using both DNA and RNA extraction workflows

H. Solo-Gabriele, G. Grills, S. Schürer, 2023, The Science of the total environment.

Degradation rates influence the ability of composite samples to represent 24-hourly means of SARS-CoV-2 and other microbiological target measures in wastewater

P. McCabe, H. Solo-Gabriele, G. Grills, 2023, Science of The Total Environment.

First Detection of the Monkeypox Virus Using Wastewater-Based Surveillance in Miami-Dade County

H. Solo-Gabriele, G. Grills, S. Schürer, 2022, SSRN Electronic Journal.

Proteomic cellular signatures of kinase inhibitor-induced cardiotoxicity

J. Goldfarb, M. Birtwistle, E. Sobie, 2022, Scientific data.

Proteomic cellular signatures of kinase inhibitor-induced cardiotoxicity

R. Iyengar, J. Goldfarb, M. Birtwistle, 2020, Scientific Data.

Multiscale mapping of transcriptomic signatures for cardiotoxic drugs

Seth I. Berger, R. Sebra, J. Goldfarb, 2023, bioRxiv.

Quest for Molecular Graphs with Maximal Energy: A Computer Experiment

Ivan Gutman, Dusica Vidovic, I. Gutman, 2001, J. Chem. Inf. Comput. Sci..

Chemical applications of the Laplacian spectrum. VII. Studies of the Wiener and Kirchhoff indices

I. Gutman, Boris Furtula, D. Vidović, 2003 .

Extremal Chemical Trees

I. Gutmana, D. Rautenbach, L. Volkmann, 2002 .

Potent inhibitors of Huntingtin protein aggregation in a cell-based assay.

D. Vidovic, M. Cremona, D. Landry, 2009, Bioorganic & medicinal chemistry letters.

Correlative Analysis of Wastewater Trends with Clinical Cases and Hospitalizations through Five Dominant Variant Waves of COVID-19

H. Solo-Gabriele, G. Grills, Sion L. Williams, 2023, ACS ES&T Water.

piNET: a versatile web platform for downstream analysis and visualization of proteomics data

Cathy H. Wu, Mario Medvedovic, Avi Ma'ayan, 2019, bioRxiv.

Epigenetic Pathways and Glioblastoma Treatment: Insights From Signaling Cascades

Bryce K. Allen, A. Capobianco, D. Robbins, 2015, Journal of cellular biochemistry.

Ordering of alkane isomers by means of connectivity indices

Ivan Gutman, Dusica Vidovic, I. Gutman, 2002 .

Discovery of a novel submicromolar inhibitor of the lymphoid specific tyrosine phosphatase.

Caty Chung, Stephan Schürer, Yuli Xie, 2008, Bioorganic & medicinal chemistry letters.

Exploratory computational assessment of possible binding modes for small molecule inhibitors of the CD40-CD154 co-stimulatory interaction.

P. Buchwald, S. Schürer, L. Ganesan, 2012, Die Pharmazie.

Potent inhibitors of Huntingtin protein aggregation in a cell-based assay.

M. Cremona, D. Landry, S. Schürer, 2009, Bioorganic & medicinal chemistry letters.

Chirality Codes and Molecular Structure

Johann Gasteiger, Ivan Gutman, João Aires-de-Sousa, 2004, J. Chem. Inf. Model..

A Concealed Property of the Topological Index Z

I. Gutman, H. Hosoya, Boris Furtula, 2004 .

The Relation between the Eigenvalue Sum and the Topological Index Z Revisited.

I. Gutman, H. Hosoya, D. Vidović, 2002 .

Coulson function and Hosoya index

Boris Furtula, Ivan Gutman, Dusica Vidovic, 2002 .

On Statistics of Graph Energy

I. Gutman, A. Graovac, P. John, 2001 .

The energy of a graph and its size dependence. A Monte Carlo approach

Ivan Gutman, Dusica Vidovic, Tanja Soldatović, 1998 .

The Energy of a Graph and its Size Dependence. An Improved Monte Carlo Approach

I. Gutman, A. Kerber, H. Fripertinger, 2001 .

Best practices for managing and disseminating resources and outreach and evaluating the impact of the IDG Consortium.

A. Waller, Jayme Holmes, D. Vidović, 2024, Drug discovery today.

Lovastatin lactone may improve irritable bowel syndrome with constipation (IBS-C) by inhibiting enzymes in the archaeal methanogenesis pathway [version 1; peer review: 1 approved with reservations]

Steven M. Muskal, V. Wacher, J. Kokai-Kun, 2022 .

TIN-X version 3: update with expanded dataset and modernized architecture for enhanced illumination of understudied targets

Tudor I. Oprea, Stephen L. Mathias, Timothy K Sheils, 2024, PeerJ.