Vsevolod Katritch

发表

SimiCon: a web tool for protein-ligand model comparison through calculation of equivalent atomic contacts

Ruben Abagyan, Manuel Rueda, Vsevolod Katritch, 2010, Bioinform..

Modeling ligand recognition at the P2Y12 receptor in light of X-ray structural information

Qiang Zhao, Stefano Moro, Christa E. Müller, 2015, Journal of Computer-Aided Molecular Design.

Discovery of small molecule inhibitors of ubiquitin-like poxvirus proteinase I7L using homology modeling and covalent docking approaches

Ruben Abagyan, Maxim Totrov, Dennis E. Hruby, 2007, J. Comput. Aided Mol. Des..

Ligand-guided receptor optimization.

Ruben Abagyan, Manuel Rueda, Vsevolod Katritch, 2012, Methods in molecular biology.

Computational design of thermostabilizing point mutations for G protein-coupled receptors

Vadim Cherezov, Vsevolod Katritch, Yao Peng, 2018, eLife.

Computational design for thermostabilization of GPCRs.

Petr Popov, Vsevolod Katritch, Igor Kozlovskii, 2019, Current opinion in structural biology.

ICFF: A new method to incorporate implicit flexibility into an internal coordinate force field

Ruben Abagyan, Maxim Totrov, Vsevolod Katritch, 2003, J. Comput. Chem..

Identifying conformational changes of the β2 adrenoceptor that enable accurate prediction of ligand/receptor interactions and screening for GPCR modulators

Ruben Abagyan, Vsevolod Katritch, Kimberly A. Reynolds, 2009, J. Comput. Aided Mol. Des..

Single-molecule view of basal activity and activation mechanisms of the G protein-coupled receptor β2AR

Kurt Wüthrich, Vsevolod Katritch, Kate L White, 2015, Proceedings of the National Academy of Sciences.

Biased Signaling Pathways in β2-Adrenergic Receptor Characterized by 19F-NMR

Kurt Wüthrich, Vsevolod Katritch, Raymond C Stevens, 2012, Science.

Structure of a Class C GPCR Metabotropic Glutamate Receptor 1 Bound to an Allosteric Modulator

Jens Meiler, Raymond C. Stevens, Colleen M. Niswender, 2014, Science.

Structure-based discovery of novel chemotypes for adenosine A(2A) receptor antagonists.

Ruben Abagyan, Judy Lin, Irina Kufareva, 2010, Journal of medicinal chemistry.

Structure of the Angiotensin Receptor Revealed by Serial Femtosecond Crystallography

Sébastien Boutet, Marc Messerschmidt, Petra Fromme, 2015, Cell.

1.8 A structure of ba3 cytochrome c oxidase from Thermus thermophilus in lipid environment

Vadim Cherezov, Vsevolod Katritch, Wei Liu, 2011 .

Structure of the Human Dopamine D3 Receptor in Complex with a D2/D3 Selective Antagonist

Jonathan A. Javitch, Lei Shi, Raymond C. Stevens, 2010, Science.

Native phasing of x-ray free-electron laser data for a G protein–coupled receptor

Anton Barty, Sébastien Boutet, Petra Fromme, 2016, Science Advances.

Structure and Modeling of GPCRs: Implications for Drug Discovery

Ruben Abagyan, Vsevolod Katritch, Kimberly A. Reynolds, 2010 .

Structure-Based Discovery of Novel Chemotypes for Adenosine A 2 A Receptor Antagonists

Ruben Abagyan, Adriaan P. IJzerman, Judy Lin, 2010 .

Genetically Encoded Chemical Probes in Cells Reveal the Binding Path of Urocortin-I to CRF Class B GPCR

Lei Wang, Raymond C. Stevens, Vsevolod Katritch, 2013, Cell.

Ligand binding and subtype selectivity of the human A(2A) adenosine receptor: identification and characterization of essential amino acid residues.

Vsevolod Katritch, Raymond C Stevens, R. Stevens, 2010, The Journal of biological chemistry.

Analysis of full and partial agonists binding to β2‐adrenergic receptor suggests a role of transmembrane helix V in agonist‐specific conformational changes

Ruben Abagyan, Vadim Cherezov, Vsevolod Katritch, 2009, Journal of molecular recognition : JMR.

Structure of the human histamine H1 receptor complex with doxepin

Ruben Abagyan, Graeme Winter, Raymond C. Stevens, 2011, Nature.

In vitro expression and analysis of the 826 human G protein-coupled receptors

Lu Zhang, Vsevolod Katritch, Lixia Zhao, 2016, Protein & Cell.

GPCR agonist binding revealed by modeling and crystallography.

Ruben Abagyan, Vsevolod Katritch, R. Abagyan, 2011, Trends in pharmacological sciences.

Structure of the human glucagon class B G-protein-coupled receptor

Chris de Graaf, Raymond C. Stevens, Dehua Yang, 2013, Nature.

5-HT2C Receptor Structures Reveal the Structural Basis of GPCR Polypharmacology

David E. Gloriam, John D. McCorvy, Bryan L. Roth, 2018, Cell.

Reprogramming by Activation of TET Proteins CRL 4 Complex Regulates Mammalian Oocyte Survival and

Anton Barty, Sébastien Boutet, Henry N. Chapman, 2013 .

Structure-Based Ligand Discovery Targeting Orthosteric and Allosteric Pockets of Dopamine Receptors

Ruben Abagyan, Vadim Cherezov, Vsevolod Katritch, 2013, Molecular Pharmacology.

Evaluation of molecular modeling of agonist binding in light of the crystallographic structure of an agonist-bound A₂A adenosine receptor.

Fei Xu, Francesca Deflorian, Vsevolod Katritch, 2012, Journal of medicinal chemistry.

Harnessing Ion-Binding Sites for GPCR Pharmacology

Vsevolod Katritch, Bryan L Roth, Barbara Zarzycka, 2019, Pharmacological Reviews.

Sodium Ion Binding Pocket Mutations and Adenosine A2A Receptor Function

Hugo Gutiérrez-de-Terán, Adriaan P IJzerman, Eelke B Lenselink, 2015, Molecular Pharmacology.

An autism spectrum disorder-related de novo mutation hotspot discovered in the GEF1 domain of Trio

Vsevolod Katritch, Cosimo Arnesano, V. Katritch, 2017, Nature Communications.

Structural Basis for Ligand Recognition and Functional Selectivity at Angiotensin Receptor*♦

Raymond C. Stevens, Vadim Cherezov, Nilkanth Patel, 2015, The Journal of Biological Chemistry.

Crystal structure of misoprostol bound to the labor inducer prostaglandin E2 receptor

Petr Popov, Wenqing Shui, Raymond C. Stevens, 2018, Nature Chemical Biology.

Generic GPCR residue numbers - aligning topology maps while minding the gaps.

Chris de Graaf, Stefan Mordalski, Vignir Isberg, 2015, Trends in pharmacological sciences.

Structural basis for bifunctional peptide recognition at human δ-Opioid receptor

Anton Barty, Sébastien Boutet, Marc Messerschmidt, 2015, Nature Structural &Molecular Biology.

GPCR 3D homology models for ligand screening: Lessons learned from blind predictions of adenosine A2a receptor complex

Ruben Abagyan, Vsevolod Katritch, Mark Yeager, 2010, Proteins.

Structure of the Nociceptin/Orphanin FQ Receptor in Complex with a Peptide Mimetic

Bryan L. Roth, Raymond C. Stevens, Vadim Cherezov, 2012, Nature.

Structural basis for Smoothened receptor modulation and chemoresistance to anticancer drugs

Vadim Cherezov, Vsevolod Katritch, Bryan L Roth, 2014, Nature Communications.

The role of a sodium ion binding site in the allosteric modulation of the A(2A) adenosine G protein-coupled receptor.

David Rodríguez, Hugo Gutiérrez-de-Terán, Vadim Cherezov, 2013, Structure.

Molecular control of δ-opioid receptor signalling

Bryan L. Roth, Raymond C. Stevens, Vadim Cherezov, 2014, Nature.

Allosteric sodium in class A GPCR signaling.

Vadim Cherezov, Vsevolod Katritch, Bryan L Roth, 2014, Trends in biochemical sciences.

In meso crystal structure and docking simulations suggest an alternative proteoglycan binding site in the OpcA outer membrane adhesin

Aleksei Aksimentiev, Wei Liu, Martin Caffrey, 2008, Proteins.

The GPCR Network: a large-scale collaboration to determine human GPCR structure and function

Ruben Abagyan, Kurt Wüthrich, Hugh Rosen, 2012, Nature Reviews Drug Discovery.

Structure of the human kappa opioid receptor in complex with JDTic

Bryan L. Roth, Raymond C. Stevens, Vadim Cherezov, 2012, Nature.

Diversity and modularity of G protein-coupled receptor structures.

Vadim Cherezov, Vsevolod Katritch, Raymond C Stevens, 2012, Trends in pharmacological sciences.

Advances in GPCR modeling evaluated by the GPCR Dock 2013 assessment: meeting new challenges.

Ruben Abagyan, Irina Kufareva, Vsevolod Katritch, 2014, Structure.

Lipidic cubic phase injector facilitates membrane protein serial femtosecond crystallography

Anton Barty, Sébastien Boutet, Marc Messerschmidt, 2014, Nature Communications.

Structure of the human smoothened receptor bound to an antitumour agent

Bryan L. Roth, Raymond C. Stevens, Vadim Cherezov, 2013, Nature.

Optimization of adenosine 5'-carboxamide derivatives as adenosine receptor agonists using structure-based ligand design and fragment screening.

Ruben Abagyan, Fei Xu, Francesca Deflorian, 2012, Journal of medicinal chemistry.

Status of GPCR modeling and docking as reflected by community-wide GPCR Dock 2010 assessment.

Ruben Abagyan, Irina Kufareva, Vsevolod Katritch, 2011, Structure.

Structure based prediction of subtype-selectivity for adenosine receptor antagonists

Ruben Abagyan, Irina Kufareva, Vsevolod Katritch, 2011, Neuropharmacology.