Thomas Dandekar

Thomas Dandekar, Meik Kunz, Thorsten Walles, 2017, Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine.

Metabolic Interdependence of Obligate Intracellular Bacteria and Their Insect Hosts

Thomas Dandekar, Roy Gross, T. Dandekar, 2004, Microbiology and Molecular Biology Reviews.

Recent Developments in Metabolic Pathway Analysis and Their Potential Implications for Biotechnology and Medicine

David A. Fell, Stefan Schuster, Matthias Reuss, 2000 .

Iron Regulation and the Cell Cycle

Peter Bengert, Thomas Dandekar, Yevhen Vainshtein, 2006, Journal of Biological Chemistry.

The 3'-Untranslated Region of the Human Estrogen Receptor α Gene Mediates Rapid Messenger Ribonucleic Acid Turnover.

Heike Brand, Thomas Dandekar, Vera Sonntag-Buck, 2000, Endocrinology.

Toward Computer-Based Cleavage Site Prediction of Cysteine Endopeptidases

Christoph Peters, Thomas Dandekar, Thomas Reinheckel, 2003, Biological chemistry.

Tardigrade workbench: comparing stress-related proteins, sequence-similar and functional protein clusters as well as RNA elements in tardigrades

Frank Förster, Marcus Frohme, Chunguang Liang, 2009, BMC Genomics.

Hiv/aids – Research and Palliative Care Dovepress Gene Expression Profiles and Protein–protein Interaction Network Analysis in Aids Patients with Hiv-associated Encephalitis and Dementia

Thomas Dandekar, Sergey Shityakov, Carola Förster, 2022 .

Development of Long Noncoding RNA-Based Strategies to Modulate Tissue Vascularization

Thomas Thum, Ke Xiao, Thomas Dandekar, 2015, Journal of the American College of Cardiology.

Systematic Identification of Anti-Fungal Drug Targets by a Metabolic Network Approach

Nir Osherov, Chunguang Liang, Zohar Meir, 2016, Front. Mol. Biosci..

Accurate and robust phylogeny estimation based on profile distances: a study of the Chlorophyceae (Chlorophyta)

Sven Rahmann, Thomas Dandekar, Tobias Müller, 2004, BMC Evolutionary Biology.

Systems Biology Analysis to Understand Regulatory miRNA Networks in Lung Cancer.

Thomas Dandekar, Meik Kunz, T. Dandekar, 2018, Methods in molecular biology.

Refined Genetic Algorithm Simulations to Model Proteins

Thomas Dandekar, Rainer König, 1999 .

Connecting Cancer Pathways to Tumor Engines: A Stratification Tool for Colorectal Cancer Combining Human In Vitro Tissue Models with Boolean In Silico Models

Heike Walles, Thomas Dandekar, Meik Kunz, 2019, Cancers.

Explorative data analysis of MCL reveals gene expression networks implicated in survival and prognosis supported by explorative CGH analysis

Thomas Dandekar, Julia C. Engelmann, Tobias Müller, 2008, BMC Cancer.

Bioinformatics of cardiovascular miRNA biology.

Thomas Thum, Stefan Frantz, Chunguang Liang, 2015, Journal of molecular and cellular cardiology.

Exploitation of gene context to infer evolution and to predict function

Peer Bork, Berend Snel, Martijn A. Huynen, 2000 .

Ribosomal RNA phylogenetics: the third dimension

Thomas Dandekar, Alexander Keller, T. Dandekar, 2010, Biologia.

Salmonella enterica: a surprisingly well-adapted intracellular lifestyle

Michael Hensel, Thomas Dandekar, T. Dandekar, 2012, Front. Microbio..

Description of the algorithm for computing elementary flux modes

Stefan Schuster, David Fell, Thomas Dandekar, 2000 .

An antibiotic target ranking and prioritization pipeline combining sequence, structure and network-based approaches exemplified for Serratia marcescens.

Thomas Dandekar, Shishir K. Gupta, Roy Gross, 2016, Gene.

A method for classifying metabolites in topological pathway analyses based on minimization of pathway number.

Stefan Schuster, Thomas Dandekar, Ferdinand Moldenhauer, 2003, Bio Systems.

RNA Motifs and Regulatory Elements

Thomas Dandekar, T. Dandekar, 2012, Springer Berlin Heidelberg.

Plasma steroid metabolome profiling for the diagnosis of adrenocortical carcinoma.

Martin Fassnacht, Thomas Dandekar, Meik Kunz, 2019, European journal of endocrinology.

Modeling antibiotic and cytotoxic effects of the dimeric isoquinoline IQ-143 on metabolism and its regulation in Staphylococcus aureus, Staphylococcus epidermidis and human cells

Jörg Bernhardt, Chunguang Liang, Thomas Dandekar, 2011, Genome Biology.

Investigating heat shock proteins of tardigrades in active versus anhydrobiotic state using shotgun proteomics

Marcus Frohme, Agnes Hotz-Wagenblatt, Thomas Dandekar, 2011 .

Including RNA secondary structures improves accuracy and robustness in reconstruction of phylogenetic trees

Frank Förster, Thomas Dandekar, Tobias Müller, 2010, Biology Direct.

Integrated Systems View on Networking by Hormones in Arabidopsis Immunity Reveals Multiple Crosstalk for Cytokinin[W]

Anwar Hussain, Thomas Dandekar, Nazeer Ahmed, 2012, Plant Cell.

A Combined 3D Tissue Engineered In Vitro/In Silico Lung Tumor Model for Predicting Drug Effectiveness in Specific Mutational Backgrounds.

Heike Walles, Thomas Dandekar, Meik Kunz, 2016, Journal of visualized experiments : JoVE.

Transcriptome survey of the anhydrobiotic tardigrade Milnesium tardigradum in comparison with Hypsibius dujardini and Richtersius coronifer

Frank Förster, Marcus Frohme, Thomas Dandekar, 2010, BMC Genomics.

Genetic profiling and surface proteome analysis of human atrial stromal cells and rat ventricular epicardium-derived cells reveals novel insights into their cardiogenic potential.

Gereon Poschmann, Kai Stühler, Artur Lichtenberg, 2017, Stem cell research.

Homology modeling revealed more than 20,000 rRNA internal transcribed spacer 2 (ITS2) secondary structures.

Thomas Dandekar, Tobias Müller, Marco Achtziger, 2005, RNA.

A combined tissue‐engineered/in silico signature tool patient stratification in lung cancer

Heike Walles, Thomas Dandekar, Meik Kunz, 2018, Molecular oncology.

Stress response in tardigrades: differential gene expression of molecular chaperones

Frank Förster, Marcus Frohme, Franz Brümmer, 2010, Cell Stress and Chaperones.

Suspected utility of enzymes with multiple activities in the small genome Mycoplasma species: the replacement of the missing "household" nucleoside diphosphate kinase gene and activity by glycolytic kinases.

Thomas Dandekar, T. Dandekar, J. Pollack, 2002, Omics : a journal of integrative biology.

RIP death domain structural interactions implicated in TNF‐mediated proliferation and survival

Thomas Dandekar, Christoph Borner, Juilee Thakar, 2006, Proteins.

Shared components of protein complexes--versatile building blocks or biochemical artefacts?

Peer Bork, Christian von Mering, Roland Krause, 2004, BioEssays : news and reviews in molecular, cellular and developmental biology.

Synchronous visual analysis and editing of RNA sequence and secondary structure alignments using 4SALE

Thomas Dandekar, Philipp N. Seibel, Tobias Müller, 2008, BMC Research Notes.

Establishment of a human 3D lung cancer model based on a biological tissue matrix combined with a Boolean in silico model

Heike Walles, Thomas Dandekar, Thorsten Walles, 2013, Molecular oncology.

Comparative Genome Analysis: Exploiting the Context of Genes to Infer Evolution and Predict Function

Berend Snel, Martijn A. Huynen, Thomas Dandekar, 2000 .

Distinguishing species.

Thomas Dandekar, Tobias Müller, Jörg Schultz, 2007, RNA.

Non-Coding RNAs in Lung Cancer: Contribution of Bioinformatics Analysis to the Development of Non-Invasive Diagnostic Tools

David Atlan, Beat Wolf, Heike Walles, 2016, Genes.

5.8S-28S rRNA interaction and HMM-based ITS2 annotation.

Thomas Dandekar, Tobias Müller, Alexander Keller, 2009, Gene.

Toward a Systemic Understanding of Listeria monocytogenes Metabolism during Infection

Thomas Dandekar, Wolfgang Eisenreich, T. Dandekar, 2011, Front. Microbio..

Influence of Platelet-rich Plasma on the immune response of human monocyte-derived dendritic cells and macrophages stimulated with Aspergillus fumigatus.

Stefan Schuster, Thomas Dandekar, Tobias Müller, 2017, International journal of medical microbiology : IJMM.

human platelets : a systems biologic analysis of signaling networks in PlateletWeb

Thomas Dandekar, Santosh Nilla, T. Dandekar, 2012 .

Lead expansion and virtual screening of Indinavir derivate HIV-1 protease inhibitors using pharmacophoric - shape similarity scoring function

Thomas Dandekar, Sergey Shityakov, 2010, Bioinformation.

Use of pathway analysis and genome context methods for functional genomics of Mycoplasma pneumoniae nucleotide metabolism.

Peer Bork, Stefan Schuster, Mikhail Pachkov, 2007, Gene.

Characterization of targeting domains by sequence analysis: glycogen-binding domains in protein phosphatases

Peer Bork, Thomas Dandekar, Martijn Huynen, 1998, Journal of Molecular Medicine.

Bioinformatics identifies tardigrade molecular adaptations including the DNA‐j family and first steps towards dynamical modelling

Frank Förster, Marcus Frohme, Thomas Dandekar, 2011 .