Yoav Gilad

发表

Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data

John C. Marioni, Joseph K. Pickrell, Jonathan K. Pritchard, 2009, Bioinform..

False positive peaks in ChIP-seq and other sequencing-based functional assays caused by unannotated high copy number regions

Joseph K. Pickrell, Jonathan K. Pritchard, Yoav Gilad, 2011, Bioinform..

Using DNA microarrays to study gene expression in closely related species

Gordon K. Smyth, Alicia Oshlack, Yoav Gilad, 2007, Bioinform..

Data files and codes used in the reanalysis of the mouse encode comparative gene expression data

Yoav Gilad, Orna Mizrahi-Man, 2015 .

A comparison of the human and chimpanzee olfactory receptor gene repertoires.

Gustavo Glusman, Orna Man, Yoav Gilad, 2005, Genome research.

Integrated analyses of gene expression and genetic association studies in a founder population

Roberto M. Lang, Yoav Gilad, Jack A. Elias, 2016, Human molecular genetics.

Methylation QTLs Are Associated with Coordinated Changes in Transcription Factor Binding, Histone Modifications, and Gene Expression Levels

John D. Blischak, Jonathan K. Pritchard, Julien Roux, 2014, bioRxiv.

A panel of induced pluripotent stem cells from chimpanzees: a resource for comparative functional genomics

Yoav Gilad, Louise C Laurent, Irene Gallego Romero, 2014, bioRxiv.

Sex-specific genetic architecture of human disease

Yoav Gilad, Carole Ober, Y. Gilad, 2008, Nature Reviews Genetics.

Social environment is associated with gene regulatory variation in the rhesus macaque immune system

Jenny Tung, Kasper D. Hansen, Yoav Gilad, 2012, Proceedings of the National Academy of Sciences.

Host Genetic Variation Influences Gene Expression Response to Rhinovirus Infection

Samuel W. Baker, Yoav Gilad, Carole Ober, 2015, PLoS genetics.

Methylation QTLs are associated with coordinated changes in transcription factor binding, histone modifications, and gene expression levels

John D. Blischak, Jonathan K. Pritchard, Jacob F. Degner, 2014 .

A Framework for Exploring Functional Variability in Olfactory Receptor Genes

Gordon M. Shepherd, Chiquito J. Crasto, Orna Man, 2007, PloS one.

Reorganization of 3D genome structure may contribute to gene regulatory evolution in primates

Yoav Gilad, Y. Gilad, C. Hsiao, 2018, bioRxiv.

WASP: allele-specific software for robust molecular quantitative trait locus discovery

Jonathan K. Pritchard, Yoav Gilad, Graham McVicker, 2015, Nature Methods.

Human specific loss of olfactory receptor genes

Doron Lancet, Orna Man, Yoav Gilad, 2003, Proceedings of the National Academy of Sciences of the United States of America.

msCentipede: Modeling Heterogeneity across Genomic Sites and Replicates Improves Accuracy in the Inference of Transcription Factor Binding

Matthew Stephens, Jonathan K. Pritchard, Yoav Gilad, 2015, PloS one.

Primate Transcript and Protein Expression Levels Evolve Under Compensatory Selection Pressures

Jonathan K. Pritchard, Yoav Gilad, J. Pritchard, 2013, Science.

Segmental Duplications Contribute to Gene Expression Differences Between Humans and Chimpanzees

Alicia Oshlack, Ran Blekhman, Yoav Gilad, 2009, Genetics.

The effects of EBV transformation on gene expression levels and methylation profiles.

Yoav Gilad, Carole Ober, Y. Gilad, 2011, Human molecular genetics.

Epigenetic Modifications are Associated with Inter-species Gene Expression Variation in Primates

Emily R. Davenport, Matthew Stephens, Jonathan K. Pritchard, 2014 .

Gene Regulation in Primates Evolves under Tissue-Specific Selection Pressures

Alicia Oshlack, Ran Blekhman, Yoav Gilad, 2008, PLoS genetics.

A Genome Sequence Resource for the Aye-Aye (Daubentonia madagascariensis), a Nocturnal Lemur from Madagascar

Páll Melsted, Aakrosh Ratan, Webb Miller, 2011, Genome biology and evolution.

The Functional Consequences of Variation in Transcription Factor Binding

Jonathan K. Pritchard, Yoav Gilad, J. Pritchard, 2013, PLoS genetics.

A signature of evolutionary constraint on a subset of ectopically expressed olfactory receptor genes.

Omar De la Cruz, Ran Blekhman, Yoav Gilad, 2008, Molecular biology and evolution.

DNA methylation in lung cells is associated with asthma endotypes and genetic risk.

Yoav Gilad, Carole Ober, Dan L Nicolae, 2016, JCI insight.

Identification of Genetic Variants That Affect Histone Modifications in Human Cells

Jonathan K. Pritchard, Jacob F. Degner, Yoav Gilad, 2013, Science.

Expression quantitative trait loci detected in cell lines are often present in primary tissues.

Yoav Gilad, Graham Coop, G. Coop, 2009, Human molecular genetics.

Expression profiling in primates reveals a rapid evolution of human transcription factors

Terence P. Speed, Kevin P. White, Alicia Oshlack, 2006, Nature.

Evolution of bitter taste receptors in humans and apes.

Orna Man, Yoav Gilad, Svante Pääbo, 2005, Molecular biology and evolution.

Supplementary Information for Impact of regulatory variation across human iPSCs and differentiated cells

Anshul Kundaje, Samantha M Thomas, Yoav Gilad, 2017 .

The genetic architecture of gene expression levels in wild baboons

Matthew Stephens, Jenny Tung, Yoav Gilad, 2014, bioRxiv.

Dichotomy of single-nucleotide polymorphism haplotypes in olfactory receptor genes and pseudogenes

Doron Lancet, Yoav Gilad, Karl Skorecki, 2000, Nature Genetics.

Evidence for positive selection and population structure at the human MAO-A gene

Doron Lancet, Molly Przeworski, Yoav Gilad, 2002, Proceedings of the National Academy of Sciences of the United States of America.

Epigenetic modifications are associated with inter-species gene expression variation in primates

Xiang Zhou, Emily R. Davenport, Matthew Stephens, 2014, bioRxiv.

Human genomics: Cracking the regulatory code

Yoav Gilad, Y. Gilad, Michelle C. Ward, 2017, Nature.

A reanalysis of mouse ENCODE comparative gene expression data

Yoav Gilad, Orna Mizrahi-Man, Y. Gilad, 2015, F1000Research.

Comparative RNA sequencing reveals substantial genetic variation in endangered primates.

Páll Melsted, Matthew Stephens, Joseph K. Pickrell, 2012, Genome research.

Dissecting the regulatory architecture of gene expression QTLs

Matthew Stephens, Jean-Baptiste Veyrieras, Jacob F. Degner, 2012, Genome Biology.

Multi-species microarrays reveal the effect of sequence divergence on gene expression profiles.

Mark Gerstein, Scott A. Rifkin, Paul Bertone, 2005, Genome research.

Gene Expression Differences Among Primates Are Associated With Changes in a Histone Epigenetic Modification

John C. Marioni, Ran Blekhman, Yoav Gilad, 2011, Genetics.

A comparative study of endoderm differentiation in humans and chimpanzees

John D. Blischak, Yoav Gilad, Y. Gilad, 2017, Genome Biology.

The Contribution of RNA Decay Quantitative Trait Loci to Inter-Individual Variation in Steady-State Gene Expression Levels

Matthew Stephens, Joseph K. Pickrell, Jonathan K. Pritchard, 2012, PLoS genetics.

Natural selection on the olfactory receptor gene family in humans and chimpanzees.

Doron Lancet, Yoav Gilad, Svante Pääbo, 2003, American journal of human genetics.

Using DNA microarrays to study natural variation.

Yoav Gilad, Y. Gilad, J. Borevitz, 2006, Current opinion in genetics & development.

Population differences in the human functional olfactory repertoire.

Doron Lancet, Yoav Gilad, Y. Gilad, 2003, Molecular biology and evolution.

The combination of a genome-wide association study of lymphocyte count and analysis of gene expression data reveals novel asthma candidate genes

Xiang Zhou, Athma A. Pai, Yoav Gilad, 2012, Human molecular genetics.

Prediction of the odorant binding site of olfactory receptor proteins by human–mouse comparisons

Doron Lancet, Orna Man, Yoav Gilad, 2004, Protein science : a publication of the Protein Society.

Deciphering the genetic architecture of variation in the immune response to Mycobacterium tuberculosis infection

John C. Marioni, Athma A. Pai, Yoav Gilad, 2012, Proceedings of the National Academy of Sciences.

Impact of regulatory variation from RNA to protein

Alexis Battle, Jonathan K. Pritchard, Yoav Gilad, 2015, Science.

Absence of the TAP2 Human Recombination Hotspot in Chimpanzees

Matthew Stephens, Molly Przeworski, Yoav Gilad, 2004, PLoS biology.

Bacterial infection remodels the DNA methylation landscape of human dendritic cells

Miao Yu, Jenny Tung, Kasper D Hansen, 2015, bioRxiv.

Discovery and characterization of variance QTLs in human induced pluripotent stem cells

Matthew Stephens, John D Blischak, Yoav Gilad, 2019, PLoS genetics.

The Genetic and Mechanistic Basis for Variation in Gene Regulation

Jonathan K. Pritchard, Athma A. Pai, Yoav Gilad, 2015, PLoS genetics.

Characterizing and inferring quantitative cell cycle phase in single-cell RNA-seq data analysis

John D. Blischak, Matthew Stephens, Yoav Gilad, 2019, bioRxiv.

Thousands of novel translated open reading frames in humans inferred by ribosome footprint profiling

Matthew Stephens, Jonathan K. Pritchard, Yoav Gilad, 2015 .