Johannes M. Freudenberg

发表

A Comprehensive Analysis of the Effect of Microarray Data Preprocessing Methods on Differentially Expressed Transcript Selection

Weixiong Zhang, Monika Ray, Johannes M. Freudenberg, 2008 .

Bayesian infinite mixture models for gene clustering and simultaneous context selection using high-throughput gene expression data

Johannes M. Freudenberg, J. Freudenberg, 2009 .

Evaluation of Analytical Methods for Connectivity Map Data

Pankaj Agarwal, Vinod Kumar, Jie Cheng, 2012, Pacific Symposium on Biocomputing.

Generalized random set framework for functional enrichment analysis using primary genomics datasets

Mario Medvedovic, Siva Sivaganesan, Mukta Phatak, 2011, Bioinform..

Genome-Wide Signatures of Transcription Factor Activity: Connecting Transcription Factors, Disease, and Small Molecules

Jing Chen, Zhen Hu, Mario Medvedovic, 2013, PLoS Comput. Biol..

A comprehensive analysis of the effect of microarray data

Weixiong Zhang, Monika Ray, Johannes M. Freudenberg, 2006 .

BMC Bioinformatics BioMed Central Methodology article CLEAN: CLustering Enrichment ANalysis

Zhen Hu, Mario Medvedovic, Johannes M. Freudenberg, 2009 .

WebGimm: An integrated web-based platform for cluster analysis, functional analysis, and interactive visualization of results

Zhen Hu, Mario Medvedovic, Johannes M. Freudenberg, 2010, Source Code for Biology and Medicine.

A semi-parametric Bayesian model for unsupervised differential co-expression analysis

Mario Medvedovic, Siva Sivaganesan, Michael Wagner, 2010, BMC Bioinformatics.

Diverse stresses dramatically alter genome-wide p53 binding and transactivation landscape in human cancer cells

Johannes M. Freudenberg, Raja Jothi, Raja Jothi, 2013, Nucleic acids research.

Acute depletion of Tet1-dependent 5-hydroxymethylcytosine levels impairs LIF/Stat3 signaling and results in loss of embryonic stem cell identity

Sailu Yellaboina, Johannes M. Freudenberg, Raja Jothi, 2011, Nucleic acids research.