Hua Xu

发表

Determining molecular predictors of adverse drug reactions with causality analysis based on structure learning

Jun Hu, Yong Hu, Hua Xu, 2014, J. Am. Medical Informatics Assoc..

How do we share data in COVID-19 research? A systematic review of COVID-19 datasets in PubMed Central Articles

L. Ohno-Machado, Hua Xu, Yong Chen, 2020, Briefings Bioinform..

A publicly available benchmark for biomedical dataset retrieval: the reference standard for the 2016 bioCADDIE dataset retrieval challenge

Lucila Ohno-Machado, Hua Xu, Trevor Cohen, 2017, Database J. Biol. Databases Curation.

Finding useful data across multiple biomedical data repositories using DataMed

Anupama E. Gururaj, Alejandra N. González-Beltrán, L. Ohno-Machado, 2017, Nature Genetics.

Systematic comparison of phenome-wide association study of electronic medical record data and genome-wide association study data

Melissa A. Basford, Raquel M. Zink, J. Haines, 2013, Nature Biotechnology.

A study of active learning methods for named entity recognition in clinical text

Hua Xu, Joshua C. Denny, Qiaozhu Mei, 2015, J. Biomed. Informatics.

Integrating existing natural language processing tools for medication extraction from discharge summaries

Son Doan, Hua Xu, Joshua C. Denny, 2010, J. Am. Medical Informatics Assoc..

Application of information technology: MedEx: a medication information extraction system for clinical narratives

Son Doan, Shane P Stenner, Hua Xu, 2010, J. Am. Medical Informatics Assoc..

Education, collaboration, and innovation: intelligent biology and medicine in the era of big data

Zhongming Zhao, Yufei Huang, J. Edwards, 2015, BMC Genomics.

Learning from local to global - an efficient distributed algorithm for modeling time-to-event data

Jason H. Moore, Martijn J. Schuemie, Jiang Bian, 2020, bioRxiv.

Learning from electronic health records across multiple sites: A communication-efficient and privacy-preserving distributed algorithm

Zixuan Liu, Mary Regina Boland, Martijn J Schuemie, 2019, J. Am. Medical Informatics Assoc..

The UMLS knowledge sources at 30: indispensable to current research and applications in biomedical informatics

Guilherme Del Fiol, Betsy L. Humphreys, Hua Xu, 2020, J. Am. Medical Informatics Assoc..

The application of artificial intelligence and data integration in COVID-19 studies: a scoping review

Yi Guo, J. Bian, T. Lyu, 2021, J. Am. Medical Informatics Assoc..

Classification of Cancer Primary Sites Using Machine Learning and Somatic Mutations

Zhongming Zhao, Jingchun Sun, Hua Xu, 2015, BioMed research international.

Assessment of Electronic Health Record for Cancer Research and Patient Care Through a Scoping Review of Cancer Natural Language Processing

J. Warner, Nan Wang, Liwei Wang, 2022, JCO clinical cancer informatics.

Evaluation of mCODE Coverage in EHR: a Scoping Review of Cancer Natural Language Processing

J. Warner, Nan Wang, Liwei Wang, 2022, 2022 IEEE 10th International Conference on Healthcare Informatics (ICHI).

CTNNA3 and SEMA3D: Promising loci for asthma exacerbation identified through multiple genome-wide association studies.

S. Weiss, D. Roden, J. Denny, 2015, The Journal of allergy and clinical immunology.

Research and applications: ICD-9 tobacco use codes are effective identifiers of smoking status

Hua Xu, William S. Bush, Anushi Shah, 2013, J. Am. Medical Informatics Assoc..

Large-scale prediction of adverse drug reactions using chemical, biological, and phenotypic properties of drugs

Hua Xu, Mei Liu, Zhongming Zhao, 2012, J. Am. Medical Informatics Assoc..

Presence of complete murine viral genome sequences in patient-derived xenografts

Jiaqian Wu, Jay-Jiguang Zhu, W. J. Zheng, 2021, Nature Communications.

Investigating MicroRNA and transcription factor co-regulatory networks in colorectal cancer

Zhongming Zhao, Jingchun Sun, Qi Liu, 2017, BMC Bioinformatics.

The effect of nursing participation in the design of a critical care information system: a case study in a Chinese hospital

Qiong Wu, Xiaodi Huang, Hua Xu, 2017, BMC Medical Informatics and Decision Making.

Prediction of human population responses to toxic compounds by a collaborative competition

Ana L. Teixeira, Eleni G. Christodoulou, Jeffrey T. Chang, 2015, Nature Biotechnology.

The Strength of the Weakest Supervision: Topic Classification Using Class Labels

Yue Wang, Kai Zheng, Qiaozhu Mei, 2019, NAACL.

The BRAIN Initiative Cell Census Network Data Ecosystem: A User’s Guide

Maja A. Puchades, Timothy L. Tickle, Thomas L. Athey, 2022, bioRxiv.

Toward Repurposing Metformin as a Precision Anti-Cancer Therapy Using Structural Systems Pharmacology

Zhongming Zhao, Lei Xie, Hua Xu, 2016, Scientific Reports.

Efficient and Accurate Extracting of Unstructured EHRs on Cancer Therapy Responses for the Development of RECIST Natural Language Processing Tools: Part I, the Corpus

Hua Xu, Ping Yang, Jeremy L Warner, 2020, JCO clinical cancer informatics.

The CHEMDNER corpus of chemicals and drugs and its annotation principles

Zhiyong Lu, Karin M. Verspoor, Hongfang Liu, 2015, Journal of Cheminformatics.

Novel informatics approaches to COVID-19 Research: From methods to applications

D. Buckeridge, Hua Xu, P. Tarczy-Hornoch, 2022, Journal of Biomedical Informatics.

A weighted and integrated drug-target interactome: drug repurposing for schizophrenia as a use case

Ergin Soysal, Hua Xu, W. Jim Zheng, 2015, BMC Systems Biology.

Extracting entities with attributes in clinical text via joint deep learning

Yaoyun Zhang, Qingcai Chen, Buzhou Tang, 2019, J. Am. Medical Informatics Assoc..

A study of generalizability of recurrent neural network-based predictive models for heart failure onset risk using a large and heterogeneous EHR data set

Fei Wang, Xin Geng, Hua Xu, 2018, J. Biomed. Informatics.

Validating drug repurposing signals using electronic health records: a case study of metformin associated with reduced cancer mortality

Ying Li, Hongfang Liu, Carol Friedman, 2014, J. Am. Medical Informatics Assoc..

Discovery of Noncancer Drug Effects on Survival in Electronic Health Records of Patients With Cancer: A New Paradigm for Drug Repurposing

Xianglin L. Du, Yonghui Wu, Hongfang Liu, 2019, JCO clinical cancer informatics.

Colorectal cancer drug target prediction using ontology-based inference and network analysis

Cui Tao, Junjie Chen, Hua Xu, 2015, Database J. Biol. Databases Curation.

Deep learning in clinical natural language processing: a methodical review

Bo Zhao, Jingcheng Du, Yang Xiang, 2019, J. Am. Medical Informatics Assoc..

Clinical Named Entity Recognition Using Deep Learning Models

Jun Xu, Hua Xu, Yonghui Wu, 2017, AMIA.

Comparative analysis of pharmacovigilance methods in the detection of adverse drug reactions using electronic medical records

Hua Xu, Randolph A. Miller, Mei Liu, 2013, J. Am. Medical Informatics Assoc..

A comparative study of disease genes and drug targets in the human protein interactome

Hua Xu, W. Jim Zheng, Jingchun Sun, 2015, BMC Bioinformatics.

Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen

Amir K. Foroushani, Yuanfang Guan, Jaewoo Kang, 2019, Nature Communications.

Applying active learning to high-throughput phenotyping algorithms for electronic health records data.

Hua Xu, Joshua C Denny, Robert J Carroll, 2013, Journal of the American Medical Informatics Association : JAMIA.

Ranking Gene-Drug Relationships in Biomedical Literature Using Latent Dirichlet Allocation

Hua Xu, W. Jim Zheng, Mei Liu, 2011, Pacific Symposium on Biocomputing.

Cost-aware active learning for named entity recognition in clinical text

Qingxia Chen, Trevor Cohen, Hua Xu, 2015, J. Am. Medical Informatics Assoc..

Applying active learning to assertion classification of concepts in clinical text

Hua Xu, Yukun Chen, Subramani Mani, 2012, J. Biomed. Informatics.

CMTR1 is associated with increased asthma exacerbations in patients taking inhaled corticosteroids

Terrie E. Kitchner, D. Roden, J. Denny, 2015, Immunity, inflammation and disease.

The use of a DNA biobank linked to electronic medical records to characterize pharmacogenomic predictors of tacrolimus dose requirement in kidney transplant recipients

Marylyn D. Ritchie, David W. Haas, Leena Choi, 2012, Pharmacogenetics and genomics.

Extracting and standardizing medication information in clinical text – the MedEx-UIMA system

Joshua C. Denny, Hua Xu, Min Jiang, 2014, AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science.

Extracting postmarketing adverse events from safety reports in the vaccine adverse event reporting system (VAERS) using deep learning

Meng Zhang, Jingcheng Du, Hua Xu, 2021, J. Am. Medical Informatics Assoc..

Using Ontology Fingerprints to disambiguate gene name entities in the biomedical literature

Hua Xu, Guocai Chen, W. Jim Zheng, 2015, ICBO.

Enhancing Clinical Concept Extraction with Contextual Embedding

Jingqi Wang, Hua Xu, Kirk Roberts, 2019, J. Am. Medical Informatics Assoc..

CD-REST: a system for extracting chemical-induced disease relation in literature

Yaoyun Zhang, Jun Xu, Jingqi Wang, 2016, Database J. Biol. Databases Curation.

Deciphering Signaling Pathway Networks to Understand the Molecular Mechanisms of Metformin Action

Hua Xu, Peilin Jia, Zhongming Zhao, 2015, PLoS Comput. Biol..

A systematic analysis of FDA-approved anticancer drugs

Jingqi Wang, Hua Xu, Qi Liu, 2017, BMC Systems Biology.

Interdisciplinary dialogue for education, collaboration, and innovation: Intelligent Biology and Medicine in and beyond 2013

Zhongming Zhao, Yufei Huang, Bing Zhang, 2013, BMC Genomics.

Incidences and risk factors of serious infections among different rheumatic patients: a retrospective cohort study

Hua Xu, Yang Xiang, Yujia Zhou, 2020 .

An Empirical Study for Impacts of Measurement Errors on EHR based Association Studies

Jing Huang, Rui Duan, Yong Chen, 2016, AMIA.

DataMed – an open source discovery index for finding biomedical datasets

Lucila Ohno-Machado, Ibrahim Burak Özyurt, Ergin Soysal, 2018, J. Am. Medical Informatics Assoc..

Building a search engine for finding biomedical datasets across repositories – the DataMed system

Anupama E. Gururaj, Alejandra N. González-Beltrán, Trevor, 2018 .

A polymorphism in HLA-G modifies statin benefit in asthma

Dan M Roden, Hua Xu, Joshua Denny, 2014, The Pharmacogenomics Journal.