Shi-Hua Zhang

发表

A novel two-stage method for identifying microRNA-gene regulatory modules in breast cancer

Fei Luo, Juan Liu, Wenwen Min, 2015, 2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Alignment of molecular networks by integer quadratic programming

Shi-Hua Zhang, Luonan Chen, Xiang-Sun Zhang, 2007, Bioinform..

Integrative analysis for identifying joint modular patterns of gene-expression and drug-response data

Shi-Hua Zhang, Jinyu Chen, Shihua Zhang, 2016, Bioinform..

Infer Metagenomic Abundance and Reveal Homologous Genomes Based on the Structure of Taxonomy Tree

Shi-Hua Zhang, Yu-Qing Qiu, Xue Tian, 2015, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

An effective sequence-alignment-free superpositioning of pairwise or multiple structures with missing data

Benzhuo Lu, Guoliang Xu, Shi-Hua Zhang, 2016, Algorithms for Molecular Biology.

Comparative pan-cancer DNA methylation analysis reveals cancer common and specific patterns

Xiaofei Yang, Shi-Hua Zhang, Lin Gao, 2016, Briefings Bioinform..

Clustering complex networks and biological networks by nonnegative matrix factorization with various similarity measures

Shi-Hua Zhang, Luonan Chen, Xiang-Sun Zhang, 2008, Neurocomputing.

3D Rotation Invariant Features for the Characterization of Molecular Density Maps

Min Xu, Shi-Hua Zhang, Frank Alber, 2009, 2009 IEEE International Conference on Bioinformatics and Biomedicine.

A novel computational framework for simultaneous integration of multiple types of genomic data to identify microRNA-gene regulatory modules

Juan Liu, Shi-Hua Zhang, Xianghong Jasmine Zhou, 2011, Bioinform..

A Unified Joint Matrix Factorization Framework for Data Integration pdf

Lihua Zhang, Shi-Hua Zhang, Shihua Zhang, 2017, ArXiv.

A hybrid graph-theoretic method for mining overlapping functional modules in large sparse protein interaction networks

Shi-Hua Zhang, Xiang-Sun Zhang, Xue-Mei Ning, 2009, Int. J. Data Min. Bioinform..

Fuzzy System Methods in Modeling Gene Expression and Analyzing Protein Networks

Shi-Hua Zhang, Luonan Chen, Xiang-Sun Zhang, 2009, Fuzzy Systems in Bioinformatics and Computational Biology.

Modelling and analysis of a delayed predator-prey model with disease in the predator

Rui Xu, Shi-Hua Zhang, R. Xu, 2013, Appl. Math. Comput..

Sparse Weighted Canonical Correlation Analysis pdf

Juan Liu, Wenwen Min, Shi-Hua Zhang, 2017, ArXiv.

Quantitative function and algorithm for community detection in bipartite networks

Shi-Hua Zhang, Xiang-Sun Zhang, Zhen-Ping Li, 2015, Inf. Sci..

A Method for Querying Conserved Subnetwork in a Large-Scale Biomolecular Network

Wu Zhang, Jiang Xie, Shi-Hua Zhang, 2009, HPCA.

Integrative cancer genomics: models, algorithms and analysis

Shi-Hua Zhang, Jinyu Chen, Jinyu Chen, 2017, Frontiers of Computer Science.

Bayesian Joint Matrix Decomposition for Data Integration with Heterogeneous Noise

Shi-Hua Zhang, Chihao Zhang, Shihua Zhang, 2017, IEEE Transactions on Pattern Analysis and Machine Intelligence.

Detecting disease associated modules and prioritizing active genes based on high throughput data

Shi-Hua Zhang, Luonan Chen, Xiang-Sun Zhang, 2010, BMC Bioinformatics.

A Querying Method with Feedback Mechanism for Protein Interaction Network

Wu Zhang, Jiang Xie, Shi-Hua Zhang, 2011, 2011 IEEE First International Conference on Healthcare Informatics, Imaging and Systems Biology.

TBC2health: a database of experimentally validated health-beneficial effects of tea bioactive compounds

Hua Yang, Jinsong Zhang, Yijun Wang, 2016, Briefings Bioinform..

Prediction of Protein Complexes Based on Protein Interaction Data and Functional Annotation Data Using Kernel Methods

Shi-Hua Zhang, Xiang-Sun Zhang, Xue-Mei Ning, 2006, ICIC.

Group-sparse SVD Models and Their Applications in Biological Data pdf

Juan Liu, Wenwen Min, Shi-Hua Zhang, 2018, ArXiv.

Promote Connections of Young Computational Biologists in China

Shi-Hua Zhang, Xiu-Jie Wang, Shihua Zhang, 2013, Genom. Proteom. Bioinform..

Edge‐group sparse PCA for network‐guided high dimensional data analysis

Juan Liu, Wenwen Min, Shi-Hua Zhang, 2018, Bioinform..

Efficient methods for identifying mutated driver pathways in cancer

Shi-Hua Zhang, Xiang-Sun Zhang, Ling-Yun Wu, 2012, Bioinform..

Travelling waves and global attractivity of an SIRS disease model with spatial diffusion and temporary immunity

Rui Xu, Shi-Hua Zhang, 2013, Appl. Math. Comput..

IIIDB: a database for isoform-isoform interactions and isoform network modules

Shi-Hua Zhang, Chun-Chi Liu, Wenyuan Li, 2015, BMC Genomics.

Identification of functional modules in a PPI network by clique percolation clustering

Shi-Hua Zhang, Xiang-Sun Zhang, Xue-Mei Ning, 2006, Comput. Biol. Chem..

Identifying Modules in Complex Networks by a Graph-Theoretical Method and Its Application in Protein Interaction Networks

Shi-Hua Zhang, Luonan Chen, Xiang-Sun Zhang, 2009, ICIC.

Co-community Structure in Multiple Evolving Networks pdf

Shi-Hua Zhang, Xiang-Sun Zhang, Junfei Zhao, 2011, ArXiv.

Identifying mutated core modules in glioblastoma by integrative network analysis

Shi-Hua Zhang, Xiang-Sun Zhang, Yong Wang, 2012, 2012 IEEE 6th International Conference on Systems Biology (ISB).

Determining modular organization of protein interaction networks by maximizing modularity density

Chris H. Q. Ding, Shi-Hua Zhang, Xiang-Sun Zhang, 2010, BMC Systems Biology.

Identifying multi-layer gene regulatory modules from multi-dimensional genomic data

Shi-Hua Zhang, Chun-Chi Liu, Wenyuan Li, 2012, Bioinform..

Disease-Aging Network Reveals Significant Roles of Aging Genes in Connecting Genetic Diseases

Shi-Hua Zhang, Luonan Chen, Xiang-Sun Zhang, 2009, PLoS Comput. Biol..

Sparse Deep Nonnegative Matrix Factorization

Shi-Hua Zhang, Zhenxing Guo, Zhenxing Guo, 2017, Big Data Min. Anal..

Identification of mutated core cancer modules by integrating somatic mutation, copy number variation, and gene expression data

Shi-Hua Zhang, Xiang-Sun Zhang, Yong Wang, 2013, BMC Systems Biology.

Guest Editorial for Special Section on ISB/TBC 2014

Shi-Hua Zhang, Luonan Chen, 2015, TCBB.

A Probabilistic Method for Estimating the Sharing of Identity by Descent for Populations with Migration

Wei Guo, Shi-Hua Zhang, Shuhua Xu, 2016, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Local community extraction in directed networks pdf

Shi-Hua Zhang, Xue-Mei Ning, Zhaoqi Liu, 2015, ArXiv.

Composite functional module inference: detecting cooperation between transcriptional regulation and protein interaction by mantel test

Chao Wu, Fan Zhang, Fei Su, 2010, BMC Systems Biology.

When to offload in two-tier smallcell networks: a Stackelberg game approach with pre-offloading-decision

Zheng Zhang, Kailing Yao, Yuhua Xu, 2016, Wireless Networks.

A Graph-Theoretic Method for Mining Functional Modules in Large Sparse Protein Interaction Networks

Shi-Hua Zhang, Xiang-Sun Zhang, Xue-Mei Ning, 2006, Sixth IEEE International Conference on Data Mining - Workshops (ICDMW'06).

Discovery of co-occurring driver pathways in cancer

Shi-Hua Zhang, Xiang-Sun Zhang, Ling-Yun Wu, 2014, BMC Bioinformatics.

DrugE-Rank: improving drug–target interaction prediction of new candidate drugs or targets by ensemble learning to rank

Shi-Hua Zhang, Hiroshi Mamitsuka, Shanfeng Zhu, 2016, Bioinform..

A neurodynamic framework for local community extraction in networks pdf

Wenwen Min, Shi-Hua Zhang, Guanghua Hu, 2015, ArXiv.

A fast mathematical programming procedure for simultaneous fitting of assembly components into cryoEM density maps

Min Xu, Shi-Hua Zhang, Frank Alber, 2010, Bioinform..

L0-norm Sparse Graph-regularized SVD for Biclustering pdf

Juan Liu, Wenwen Min, Shi-Hua Zhang, 2016, ArXiv.

Combining Sequence and Epigenomic Data to Predict Transcription Factor Binding Sites Using Deep Learning

Zhen Cao, Shi-Hua Zhang, Shao-Wu Zhang, 2018, ISBRA.

Biomolecular network querying: a promising approach in systems biology

Shi-Hua Zhang, Luonan Chen, Xiang-Sun Zhang, 2008, BMC Systems Biology.