Changyu Shen

发表

Inverse probability weighting for covariate adjustment in randomized studies

Lingling Li, Changyu Shen, Xiaochun Li, 2014, Statistics in medicine.

Incorporating conditional dependence in latent class models for probabilistic record linkage: Does it matter?

C. Shen, Xiaochun Li, Huiping Xu, 2019, The Annals of Applied Statistics.

Automated linkage of patient records from disparate sources

Changyu Shen, Xiaochun Li, Huiping Xu, 2018, Statistical methods in medical research.

Estrogen Induces Global Reorganization of Chromatin Structure in Human Breast Cancer Cells

Liran Juan, Raphaël Mourad, Hai Lin, 2014, PloS one.

A modulated empirical Bayes model for identifying topological and temporal estrogen receptor α regulatory networks in breast cancer

Yadong Wang, Yunlong Liu, Pearlly Yan, 2011, BMC Systems Biology.

RNA Polymerase II Binding Patterns Reveal Genomic Regions Involved in MicroRNA Gene Regulation

Kenneth P. Nephew, Guohua Wang, Changyu Shen, 2010, PloS one.

Epithelial-to-mesenchymal transition and ovarian tumor progression induced by tissue transglutaminase.

D. Matei, H. Nakshatri, R. Bigsby, 2009, Cancer research.

Identification and validation of genes with expression patterns inverse to multiple metastasis suppressor genes in breast cancer cell lines

N. Caplen, G. Sledge, P. Steeg, 2014, Clinical & Experimental Metastasis.

Dual targeting of EphA2 and ER restores tamoxifen sensitivity in ER/EphA2-positive breast cancer

S. Badve, M. Kinch, E. Bruckheimer, 2011, Breast Cancer Research and Treatment.

Epigenetic resensitization to platinum in ovarian cancer.

D. Matei, K. Nephew, T. Huang, 2012, Cancer research.

A statistical framework to discover true associations from multiprotein complex pull‐down proteomics data sets

Lang Li, J. Chen, C. Shen, 2006, Proteins.

Discover True Association Rates in Multi-protein Complex Proteomics Data Sets

Lang Li, Changyu Shen, Jake Yue Chen, 2005, 2005 IEEE Computational Systems Bioinformatics Conference (CSB'05).

The telomerase template antagonist GRN163L alters MDA-MB-231 breast cancer cell morphology, inhibits growth, and augments the effects of paclitaxel

Changyu Shen, Sergei M. Gryaznov, B. Herbert, 2009, Molecular Cancer Therapeutics.

An integrated computational proteomics method to extract protein targets for Fanconi Anemia studies

Mu Wang, Changyu Shen, Jake Yue Chen, 2006, SAC.

Gene Expression Analysis Reveals Distinct Pathways of Resistance to Bevacizumab in Xenograft Models of Human ER-Positive Breast Cancer

M. Ivan, Lang Li, S. Badve, 2014, Journal of Cancer.

Retention of HIV‐infected and HIV‐exposed children in a comprehensive HIV clinical care programme in Western Kenya

C. Yiannoutsos, P. Braitstein, W. Nyandiko, 2010, Tropical medicine & international health : TM & IH.

Task-Shifting of Antiretroviral Delivery From Health Care Workers to Persons Living With HIV/AIDS: Clinical Outcomes of a Community-Based Program in Kenya

W. Tierney, C. Shen, S. Kimaiyo, 2010, Journal of acquired immune deficiency syndromes.

A phase 1 and pharmacodynamic study of decitabine in combination with carboplatin in patients with recurrent, platinum‐resistant, epithelial ovarian cancer

D. Matei, K. Nephew, Lang Li, 2010, Cancer.

An empirical Bayes model for gene expression and methylation profiles in antiestrogen resistant breast cancer

Tim Hui-Ming Huang, Jaesik Jeong, Changyu Shen, 2010, BMC Medical Genomics.

Reduced renal function is associated with progression to AIDS but not with overall mortality in HIV-infected kenyan adults not initially requiring combination antiretroviral therapy

C. Shen, K. Wools-Kaloustian, B. Musick, 2011, Journal of the International AIDS Society.

Application of the Pattern-Mixture Latent Trajectory Model in an Epidemiological Study with Non-Ignorable Missingness.

Changyu Shen, Hiroko H Dodge, Mary Ganguli, 2008, Journal of data science : JDS.

Decitabine reactivated pathways in platinum resistant ovarian cancer

D. Matei, K. Nephew, C. Shen, 2014, Oncotarget.

A comparison between DASL and Affymetrix on probing the whole-transcriptome

G. Sledge, B. Leyland-Jones, Jenny C. Chang, 2016 .

HIP2: An online database of human plasma proteins from healthy individuals

Predrag Radivojac, Haixu Tang, Changyu Shen, 2008, BMC Medical Genomics.

A systems biology case study of ovarian cancer drug resistance.

J. Chen, C. Shen, Zhong Yan, 2006, Computational systems bioinformatics. Computational Systems Bioinformatics Conference.

An empirical Bayes model using a competition score for metabolite identification in gas chromatography mass spectrometry

Changyu Shen, Xiang Zhang, Xue Shi, 2011, BMC Bioinformatics.

Computer-Generated Reminders and Quality of Pediatric HIV Care in a Resource-Limited Setting

James E Slaven, Martin C Were, Changyu Shen, 2013, Pediatrics.

A hierarchical statistical model to assess the confidence of peptides and proteins inferred from tandem mass spectrometry

Lang Li, Zhiping Wang, Changyu Shen, 2008, Bioinform..

A Systems Biology Approach to the Study of cisplatin Drug Resistance in Ovarian cancers

Jake Yue Chen, Zhong Yan, Mu Wang, 2007, J. Bioinform. Comput. Biol..

Linkage of patient records from disparate sources

C. Shen, Xiaochun Li, Changyu Shen, 2013, Statistical methods in medical research.

A copula model for repeated measurements with non‐ignorable non‐monotone missing outcome

Changyu Shen, Lisa Weissfeld, L. Weissfeld, 2006, Statistics in medicine.

Impact of APE1/Ref-1 Redox Inhibition on Pancreatic Tumor Growth

A. Maitra, M. Ivan, K. Pollok, 2011, Molecular Cancer Therapeutics.

Preclinical Development Impact of APE 1 / Ref-1 Redox Inhibition on Pancreatic Tumor Growth

A. Maitra, M. Ivan, K. Pollok, 2011 .

On weighting approaches for missing data

James M Robins, Changyu Shen, J. Robins, 2013, Statistical methods in medical research.

On the estimation of false positives in peptide identifications using decoy search strategy

Quanhu Sheng, Yixue Li, Haixu Tang, 2009, Proteomics.

REGRESSION ANALYSIS IN LONGITUDINAL STUDIES WITH NON-IGNORABLE MISSING OUTCOMES

C. Shen, Changyu Shen, 2004 .

Evaluation of computer-generated reminders to improve CD4 laboratory monitoring in sub-Saharan Africa: a prospective comparative study

Paul G. Biondich, William M. Tierney, Changyu Shen, 2011, J. Am. Medical Informatics Assoc..

Mining Alzheimer Disease Relevant Proteins from Integrated Protein Interactome Data

Changyu Shen, Jake Yue Chen, Andrey Y. Sivachenko, 2005, Pacific Symposium on Biocomputing.

Plenary III–02: Propensity Score-based Sensitivity Analysis Method for Uncontrolled Confounding

C. Shen, Xiaochun Li, Lingling Li, 2010, Clinical Medicine & Research.

Application of pattern-mixture models to outcomes that are potentially missing not at random using pseudo maximum likelihood estimation.

L. Weissfeld, C. Shen, Changyu Shen, 2005, Biostatistics.

Retention of HIV-infected and exposed children in a

C. Yiannoutsos, P. Braitstein, K. Wools-Kaloustian, 2011 .

Impact of Integrated Family Planning and HIV Care Services on Contraceptive Use and Pregnancy Outcomes: A Retrospective Cohort Study

E. Carter, A. Siika, K. Wools-Kaloustian, 2011, Journal of acquired immune deficiency syndromes.

A Penalized Mixture Model Approach in Genotype/Phenotype Association Analysis for Quantitative Phenotypes

Lang Li, D. Flockhart, Z. Desta, 2010, Cancer informatics.

Implementation and Operational Research: A Time–Motion Analysis of HIV Transmission Prevention Counseling and Antiretroviral Adherence Messages in Western Kenya

C. Shen, M. Were, A. Siika, 2015, Journal of acquired immune deficiency syndromes.

Continuity of Care Document (CCD) Enables Delivery of Medication Histories to the Primary Care Clinician.

J. Overhage, C. Shen, G. Cravens, 2010, AMIA ... Annual Symposium proceedings. AMIA Symposium.

Identification of subpopulations with distinct treatment benefit rate using the Bayesian tree

Yang Hu, Changyu Shen, Yadong Wang, 2016, Biometrical journal. Biometrische Zeitschrift.

Sensitivity analysis for causal inference using inverse probability weighting

C. Shen, M. Were, Xiaochun Li, 2011, Biometrical journal. Biometrische Zeitschrift.

Using RNase sequence specificity to refine the identification of RNA-protein binding regions

Guohua Wang, Xin Wang, Sean D Mooney, 2008, BMC Genomics.

An efficient post-hoc integration method improving peak alignment of metabolomics data from GCxGC/TOF-MS

Changyu Shen, Xiang Zhang, Xue Shi, 2013, BMC Bioinformatics.

Effectiveness Research Using Electronic Health Records (EHRs)

Changyu Shen, Lingling Li, Xiaochun Li, 2016 .

Assessing the impact of a primary care electronic medical record system in three Kenyan rural health centers

William M. Tierney, Changyu Shen, Martin C. Were, 2016, J. Am. Medical Informatics Assoc..

Comparison of Computational Algorithms for the Classifi cation of Liver Cancer using SELDI Mass Spectrometry: A Case Study

G. Sledge, R. Hickey, C. Schmidt, 2008 .

A Mixture Model Approach in Gene–Gene and Gene–Environmental Interactions for Binary Phenotypes

Lang Li, H. McLeod, Menggang Yu, 2008, Journal of Biopharmaceutical Statistics.

Sensitivity Analysis of Methods for Active Surveillance of Acute Myocardial Infarction Using Electronic Databases

N. Santanello, Xiaochun Li, L. Simonaitis, 2015, Epidemiology.

Short-Term Rationing of Combination Antiretroviral Therapy: Impact on Morbidity, Mortality, and Loss to Follow-Up in a Large HIV Treatment Program in Western Kenya

P. Braitstein, S. Kimaiyo, A. Siika, 2012, AIDS research and treatment.

Treatment Benefit and Treatment Harm Rate to Characterize Heterogeneity in Treatment Effect

C. Shen, Peng-Sheng Chen, Xiaochun Li, 2013, Biometrics.

Identification and validation of genes with expression patterns inverse to multiple metastasis suppressor genes in breast cancer cell lines

N. Caplen, G. Sledge, P. Steeg, 2014, Clinical & Experimental Metastasis.

A phase 1 and pharmacodynamic study of decitabine in combination with carboplatin in patients with recurrent, platinum‐resistant, epithelial ovarian cancer

D. Matei, K. Nephew, Lang Li, 2010, Cancer.

Evaluating a scalable model for implementing electronic health records in resource-limited settings

William M. Tierney, Changyu Shen, Martin C. Were, 2010, J. Am. Medical Informatics Assoc..

Computer-Generated Reminders and Quality of Pediatric HIV Care in a Resource-Limited Setting

W. Tierney, M. Were, W. Nyandiko, 2013, Pediatrics.

Creation and evaluation of EMR-based paper clinical summaries to support HIV-care in Uganda, Africa

W. Tierney, M. Were, N. Emenyonu, 2010, Int. J. Medical Informatics.

Towards More Flexible False Positive Control in Phase III Randomized Clinical Trials

Xiaochun Li, Changyu Shen, 2019, 1902.08229.

Control of false positives in randomized phase III clinical trials

Hai Liu, Huiping Xu, Ziyue Liu, 2017, Journal of biopharmaceutical statistics.