J. Berg

发表

Out-of-equilibrium dynamics of gene expression and the Jarzynski equality.

J. Berg, 2007, Physical review letters.

Cross-species analysis of biological networks by Bayesian alignment.

Johannes Berg, M. Lässig, J. Berg, 2006, Proceedings of the National Academy of Sciences of the United States of America.

Local graph alignment and motif search in biological networks.

Michael Lässig, Johannes Berg, M. Lässig, 2003, Proceedings of the National Academy of Sciences of the United States of America.

Nonlinear Fitness Landscape of a Molecular Pathway

M. Lässig, K. Schnetz, L. Perfeito, 2011, PLoS genetics.

A Genomics-Based Classification of Human Lung Tumors

G. Getz, S. Carter, D. Hayes, 2013, Science Translational Medicine.

Can we always sweep the details of RNA-processing under the carpet?

Johannes Berg, F. Klironomos, J. de Meaux, 2013, Physical biology.

Adaptive evolution of transcription factor binding sites

Johannes Berg, M. Lässig, S. Willmann, 2003, BMC Evolutionary Biology.

On the evolution of gene regulation

M. Lässig, J. Berg, Stana Radic, 2003 .

Adaptive Evolution of Gene Expression in Drosophila.

Michael Lässig, Armita Nourmohammad, Johannes Berg, 2017, Cell reports.

Multiple-Line Inference of Selection on Quantitative Traits

Bhavin S. Khatri, M. Lässig, N. Riedel, 2014, Genetics.

How epigenetic mutations can affect genetic evolution: model and mechanism.

F. Klironomos, S. Collins, J. Berg, 2013, BioEssays : news and reviews in molecular, cellular and developmental biology.

Stochastic clonal dynamics and genetic turnover in exponentially growing populations

J. Berg, Arman Angaji, Christoph Velling, 2021, Journal of Statistical Mechanics: Theory and Experiment.

Pervasive adaptation of gene expression in Drosophila

Armita Nourmohammad, Johannes Berg, Michael Lassig, 2015, 1502.06406.

Structure and evolution of protein interaction networks: a statistical model for link dynamics and gene duplications

A. Wagner, Johannes Berg, M. Lässig, 2002, BMC Evolutionary Biology.

In vitro model for resistance in oncogene-dependent tumors at the limit of radiological detectability

Roman K. Thomas, M. Peifer, M. Sos, 2019, bioRxiv.

From protein interactions to functional annotation: graph alignment in Herpes

Michael Lässig, Johannes Berg, Michal Kolár, 2007, BMC Systems Biology.

Adaptive Evolution of Gene Expression in Drosophila Graphical Abstract Highlights

Armita Nourmohammad, V. Kováčová, Torsten Held, 2017 .

Supplemental Information Adaptive Evolution of Gene Expression in Drosophila

M. Lässig, Armita Nourmohammad, V. Kováčová, 2017 .

Supplementary Text

Johannes Berg, M. Lässig, Michael V. Kolar, 2006 .

What makes the lac-pathway switch: identifying the fluctuations that trigger phenotype switching in gene regulatory systems

Johannes Berg, J. Veening, Prasanna M. Bhogale, 2013, Nucleic acids research.

2 9 Ja n 20 03 On the evolution of gene regulation

M. Lässig, J. Berg, Stana Radic, 2003 .

Stochastic evolution of transcription factor binding sites

M. Lässig, J. Berg, 2022 .

Bayesian analysis of biological networks: clusters, motifs, cross-species correlations

Johannes Berg, Michael Lassig, M. Lassig, 2006, q-bio/0609050.

Nonlinear Fitness Landscape of a Molecular Pathway Supplementary Material

M. Lässig, K. Schnetz, L. Perfeito, 2011 .

Dynamics of gene expression and the regulatory inference problem

Johannes Berg, J. Berg, 2007, 0712.3791.

Dynamic BMP signaling polarized by Toll patterns the dorsoventral axis in a hemimetabolous insect

M. Lässig, S. Roth, K. Panfilio, 2015, eLife.

Quantitative analysis of competition in posttranscriptional regulation reveals a novel signature in target expression variation.

Johannes Berg, F. Klironomos, J. Berg, 2012, Biophysical journal.

Correlated random networks.

Johannes Berg, M. Lässig, J. Berg, 2002, Physical review letters.

GraphAlignment: Bayesian pairwise alignment of biological networks

Ville Mustonen, Michael Lässig, Johannes Berg, 2012, BMC Systems Biology.

From protein interactions to functional annotation: graph alignment in Herpes

M. Lässig, Michael V. Kolar, J. Berg, 2007, BMC Systems Biology.

Multiple-Line Inference of Selection on Quantitative Traits

Bhavin S. Khatri, M. Lässig, N. Riedel, 2014, Genetics.

Adaptive evolution of transcription factor binding sites

J. Berg, Michael Lässig, Stana Willmann, 2003, BMC Evolutionary Biology.

From protein interactions to functional annotation: graph alignment in Herpes

J. Berg, Michael Lässig, Michal Kolár, 2007, BMC Systems Biology.