Nanjiang Shu

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The newest developments of ProQ2

Arne Elofsson, Karolis Uziela, Nanjiang Shu, 2015 .

BIOINFORMATICS ORIGINAL PAPER doi:10.1093/bioinformatics/btm618 Sequence analysis Prediction of zinc-binding sites in proteins from sequence

Nanjiang Shu, Tuping Zhou, Sven Hovmöller, 2008 .

Improved topology prediction using the terminal hydrophobic helices rule

Arne Elofsson, Nanjiang Shu, Christoph Peters, 2016, Bioinform..

Improved protein model quality assessments by changing the target function

David Menéndez Hurtado, Arne Elofsson, Karolis Uziela, 2018, Proteins.

ProQ3: Improved model quality assessments using Rosetta energy terms

Arne Elofsson, Karolis Uziela, Nanjiang Shu, 2016, Scientific Reports.

KalignP: Improved multiple sequence alignments using position specific gap penalties in Kalign2

Arne Elofsson, Nanjiang Shu, A. Elofsson, 2011, Bioinform..

Improved protein model quality prediction by changing the target function

Arne Elofsson, Karolis Uziela, Nanjiang Shu, 2017 .

Inclusion of dyad-repeat pattern improves topology prediction of transmembrane β-barrel proteins

Arne Elofsson, Nanjiang Shu, Christoph Peters, 2016, Bioinform..

ProQ3D: improved model quality assessments using deep learning

Arne Elofsson, Karolis Uziela, Nanjiang Shu, 2016, Bioinform..

Protein structure prediction Zinc-binding sites, one-dimensional structure and remote homology

Nanjiang Shu, N. Shu, 2010 .

The TOPCONS web server for consensus prediction of membrane protein topology and signal peptides

Arne Elofsson, Nanjiang Shu, Lukas Käll, 2015, Nucleic Acids Res..

SubCons: a new ensemble method for improved human subcellular localization predictions

Arne Elofsson, Nanjiang Shu, Walter Basile, 2017, Bioinform..

PRODRES: Fast protein searches using a protein domain-reduced database

Arne Elofsson, Nanjiang Shu, Christoph Peters, 2017 .

The evolutionary history of topological variations in the CPA/AT superfamily

Arne Elofsson, Nanjiang Shu, Claudio Bassot, 2020, bioRxiv.

A novel method for accurate one-dimensional protein structure prediction based on fragment matching

Nanjiang Shu, Tuping Zhou, Sven Hovmöller, 2010, Bioinform..

Improved protein model quality assessments by changing the target function

David Menéndez Hurtado, Arne Elofsson, Karolis Uziela, 2018, bioRxiv.

Topology of membrane proteins-predictions, limitations and variations.

Arne Elofsson, Nanjiang Shu, Konstantinos D Tsirigos, 2018, Current opinion in structural biology.

The TOPCONS web server for consensus prediction of membrane protein topology and signal peptides

Arne Elofsson, Nanjiang Shu, Lukas Käll, 2015 .