Björn Wallner

发表

The newest developments of ProQ2

Arne Elofsson, Karolis Uziela, Nanjiang Shu, 2015 .

Identification of correct regions in protein models using structural, alignment, and consensus information

Arne Elofsson, Björn Wallner, A. Elofsson, 2006, Protein science : a publication of the Protein Society.

InterPepRank: Assessment of Docked Peptide Conformations by a Deep Graph Network

Björn Wallner, Claudio Mirabello, Isak Johansson-Åkhe, 2020, bioRxiv.

Predicting protein-peptide interaction sites using distant protein complexes as structural templates

Björn Wallner, Claudio Mirabello, Isak Johansson-Åkhe, 2018 .

Proteus: a random forest classifier to predict disorder-to-order transitioning binding regions in intrinsically disordered proteins

Björn Wallner, Sankar Basu, Fredrik Söderquist, 2016, bioRxiv.

Assessment of global and local model quality in CASP8 using Pcons and ProQ

Arne Elofsson, Björn Wallner, Per Larsson, 2009, Proteins.

Using multiple templates to improve quality of homology models in automated homology modeling

Arne Elofsson, Björn Wallner, Erik Lindahl, 2008, Protein science : a publication of the Protein Society.

Improved protein model quality assessments by changing the target function

David Menéndez Hurtado, Arne Elofsson, Karolis Uziela, 2018, Proteins.

InterLig: improved ligand-based virtual screening using topologically independent structural alignments

Björn Wallner, Claudio Mirabello, 2020, Bioinform..

Evolutionary information and multiple sequence alignments improve protein model guality prediction

Björn Wallner, Erik Lindahl, Arjun Ray, 2012 .

ProQ3: Improved model quality assessments using Rosetta energy terms

Arne Elofsson, Karolis Uziela, Nanjiang Shu, 2016, Scientific Reports.

Pcons.net: protein structure prediction meta server

Arne Elofsson, Björn Wallner, Per Larsson, 2007, Nucleic Acids Res..

rawMSA: End-to-end Deep Learning using raw Multiple Sequence Alignments

Björn Wallner, Claudio Mirabello, B. Wallner, 2019, PloS one.

Improved protein model quality prediction by changing the target function

Arne Elofsson, Karolis Uziela, Nanjiang Shu, 2017 .

Using evolutionary information for the query and target improves fold recognition

Arne Elofsson, Huisheng Fang, Björn Wallner, 2004, Proteins.

ProQM-resample: improved model quality assessment for membrane proteins by limited conformational sampling

Björn Wallner, B. Wallner, Björn Wallner, 2014, Bioinform..

rawMSA: End-to-end Deep Learning Makes Protein Sequence Profiles and Feature Extraction obsolete

Björn Wallner, Claudio Mirabello, B. Wallner, 2018, bioRxiv.

Prediction of global and local model quality in CASP7 using Pcons and ProQ

Arne Elofsson, Björn Wallner, A. Elofsson, 2007, Proteins.

Estimation of model accuracy in CASP13

Arne Elofsson, Karolis Uziela, Björn Wallner, 2019, Proteins.

ProQ2: estimation of model accuracy implemented in Rosetta

Karolis Uziela, Björn Wallner, B. Wallner, 2016, Bioinform..

Topology independent structural matching discovers novel templates for protein interfaces

Björn Wallner, Claudio Mirabello, 2017 .

Methods for estimation of model accuracy in CASP12

Arne Elofsson, Keehyoung Joo, Karolis Uziela, 2017 .

Quality Assessment of Protein Models

Arne Elofsson, Björn Wallner, A. Elofsson, 2008 .

Automatic consensus‐based fold recognition using Pcons, ProQ, and Pmodeller

Arne Elofsson, Huisheng Fang, Björn Wallner, 2003, Proteins.

Improved model quality assessment using ProQ2

Björn Wallner, Erik Lindahl, Arjun Ray, 2012, BMC Bioinformatics.

ProQ3D: improved model quality assessments using deep learning

Arne Elofsson, Karolis Uziela, Nanjiang Shu, 2016, Bioinform..

Topology independent structural matching discovers novel templates for protein interfaces

Björn Wallner, Claudio Mirabello, B. Wallner, 2017, bioRxiv.

Modeling Anesthetic Binding Sites within the Glycine Alpha One Receptor Based on Prokaryotic Ion Channel Templates: The Problem with TM4

Björn Wallner, Erik Lindahl, James R. Trudell, 2010, J. Chem. Inf. Model..

InterPred: A pipeline to identify and model protein-protein interactions

Björn Wallner, Claudio Mirabello, B. Wallner, 2016, bioRxiv.

DockQ: A Quality Measure for Protein-Protein Docking Models

Björn Wallner, Sankar Basu, B. Wallner, 2016, PloS one.

Pcons5: combining consensus, structural evaluation and fold recognition scores

Arne Elofsson, Björn Wallner, A. Elofsson, 2005, Bioinform..

Finding correct protein–protein docking models using ProQDock

Björn Wallner, Sankar Basu, B. Wallner, 2016, Bioinform..

All are not equal: A benchmark of different homology modeling programs

Arne Elofsson, Björn Wallner, A. Elofsson, 2005, Protein science : a publication of the Protein Society.

Model quality assessment for membrane proteins

Björn Wallner, Erik Lindahl, Arjun Ray, 2010, Bioinform..

Improved predictions by Pcons.net using multiple templates

Marcin J. Skwark, Arne Elofsson, Björn Wallner, 2011, Bioinform..

Methods for estimation of model accuracy in CASP12

Arne Elofsson, Keehyoung Joo, Karolis Uziela, 2017, bioRxiv.

InterPep2: global peptide–protein docking using interaction surface templates

Björn Wallner, Isak Johansson-Åkhe, Claudio Mirabello, 2020, Bioinform..

InterPep2: Global Peptide-Protein Docking with Structural Templates

Björn Wallner, Claudio Mirabello, Isak Johansson-Åkhe, 2019 .

An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12

Adam Liwo, Yi He, Jilong Li, 2018, Scientific Reports.

Improved protein model quality assessments by changing the target function

David Menéndez Hurtado, Arne Elofsson, Karolis Uziela, 2018, bioRxiv.

Predicting protein-peptide interaction sites using distant protein complexes as structural templates

Björn Wallner, Isak Johansson-Åkhe, Claudio Mirabello, 2018, Scientific Reports.

Tertiary Windowing to Detect Positive Diversifying Selection

Arne Elofsson, Björn Wallner, David A. Liberles, 2005, Journal of Molecular Evolution.

Microsecond simulations indicate that ethanol binds between subunits and could stabilize an open-state model of a glycine receptor.

Björn Wallner, Erik Lindahl, Samuel Murail, 2011, Biophysical journal.

Local Error Estimates Dramatically Improve the Utility of Homology Models for Solving Crystal Structures by Molecular Replacement

Randy J. Read, Björn Wallner, R. Read, 2015, Structure.

InterPred: A pipeline to identify and model protein-protein interactions

Björn Wallner, Claudio Mirabello, B. Wallner, 2016, bioRxiv.

Profile–profile methods provide improved fold‐recognition: A study of different profile–profile alignment methods

Arne Elofsson, Björn Wallner, Tomas Ohlson, 2004, Proteins.

SARAMAint : The Complementarity Plot for Protein–Protein Interface

Björn Wallner, Dhananjay Bhattacharyya, Sankar Basu, 2014 .

Tracking a complete voltage-sensor cycle with metal-ion bridges

Björn Wallner, Erik Lindahl, Pär Bjelkmar, 2012, Proceedings of the National Academy of Sciences.