Timothy J. Harlow

A hybrid clustering approach to recognition of protein families in 114 microbial genomes

Timothy J. Harlow, J. Peter Gogarten, Mark A. Ragan, 2004, BMC Bioinformatics.

Systematic inference of highways of horizontal gene transfer in prokaryotes

Ron Shamir, Timothy J. Harlow, J. Peter Gogarten, 2013, Bioinform..

A hybrid clustering approach to genome-scale recognition of protein families

Timothy J. Harlow, Mark A. Ragan, J. P. Gogarten, 2003, ISMB 2003.

Ancient origin of the divergent forms of leucyl-tRNA synthetases in the Halobacteriales

Timothy J. Harlow, Cheryl P. Andam, J. Gogarten, 2012, BMC Evolutionary Biology.

Highways of gene sharing in prokaryotes.

Timothy J. Harlow, M. Ragan, R. Beiko, 2005, Proceedings of the National Academy of Sciences of the United States of America.

Searching for convergence in phylogenetic Markov chain Monte Carlo.

Timothy J. Harlow, Mark A Ragan, Robert G Beiko, 2006, Systematic biology.

Does Sequence Conservation Provide Evidence for Biological Function?

Timothy J. Harlow, J. Gogarten, S. Omer, 2017, Trends in microbiology.

Short branches lead to systematic artifacts when BLAST searches are used as surrogate for phylogenetic reconstruction.

Timothy J. Harlow, J. Gogarten, A. A. Dick, 2017, Molecular phylogenetics and evolution.

Do different surrogate methods detect lateral genetic transfer events of different relative ages?

Timothy J. Harlow, Mark A Ragan, Robert G Beiko, 2006, Trends in microbiology.

Bayesian and maximum likelihood phylogenetic analyses of protein sequence data under relative branch-length differences and model violation

Timothy J. Harlow, Mark A Ragan, Jessica C Mar, 2005, BMC Evolutionary Biology.