Mateusz Banach

发表

Chain-chain complexation and heme binding in haemoglobin with respect to the hydrophobic core structure

Irena Roterman-Konieczna, Magdalena Ptak, Mateusz Banach, 2017, Bio Algorithms Med Syst..

Structural role of exon-coded fragments in proteins

Irena Roterman-Konieczna, Mateusz Banach, Leszek Konieczny, 2013, Bio Algorithms Med Syst..

Irena Roterman-Konieczna, Jacques Chomilier, Mateusz Banach, 2013, Bio Algorithms Med Syst..

Hydrophobic core structure of macromomycin – the apoprotein of the antitumor antibiotic auromomycin – fuzzy oil drop model applied

Irena Roterman-Konieczna, Mateusz Banach, Leszek Konieczny, 2015, Bio Algorithms Med Syst..

Application of divergence entropy to characterize the structure of lipid-binding proteins

Irena Roterman-Konieczna, Mateusz Banach, Roksana Rosicka, 2015, Bio Algorithms Med Syst..

Alternative Hydrophobic Core in Proteins - The Effect of Specific Synergy

Irena Roterman-Konieczna, Mateusz Banach, Leszek Konieczny, 2020, Symmetry.

Influence of the Aqueous Environment on Protein Structure - A Plausible Hypothesis Concerning the Mechanism of Amyloidogenesis

Irena Roterman-Konieczna, Mateusz Banach, Leszek Konieczny, 2016, Entropy.

The Status of Edge Strands in Ferredoxin-Like Fold

Irena Roterman-Konieczna, Mateusz Banach, Leszek Konieczny, 2020, Symmetry.

Role of the hydrophobic core in cytoskeleton protein: cardiac myosin binding protein C

Irena Roterman-Konieczna, Mateusz Banach, Zdzislaw Wisniowski, 2017, Bio Algorithms Med Syst..

Role of Disulfide Bonds in Stabilizing the Conformation of Selected Enzymes - An Approach Based on Divergence Entropy Applied to the Structure of Hydrophobic Core in Proteins

Irena Roterman-Konieczna, Mateusz Banach, Leszek Konieczny, 2016, Entropy.

Aggregation-promoting conditions necessary to create the complexes by acylphosphatase from the hyperthermophile Sulfolobus solfataricus

Irena Roterman-Konieczna, Magdalena Ptak, Mateusz Banach, 2019, Bio Algorithms Med Syst..

Stability of Two Natural Homologous Proteins with Different Folds

Irena Roterman-Konieczna, Mateusz Banach, Leszek Konieczny, 2012, Bio Algorithms Med Syst..

Ab initio protein structure prediction - the hydrophobicity distribution analysis

Fabio Polticelli, Lukasz Flis, Tomasz Szepieniec, 2011, Bio Algorithms Med Syst..

Structural analysis of the Aβ(11–42) amyloid fibril based on hydrophobicity distribution

Irena Roterman-Konieczna, Mateusz Banach, Leszek Konieczny, 2019, J. Comput. Aided Mol. Des..

Identification of protein-protein complexation area

Irena Roterman-Konieczna, Mateusz Banach, 2010, Bio Algorithms Med Syst..

Structure of hydrophobic core in plant carboxylesterase

Irena Roterman-Konieczna, Mateusz Banach, Zdzislaw Wisniowski, 2017, Bio Algorithms Med Syst..

Comparison of the structure of Aβ(1-40) amyloid with the one in complex with polyphenol ε-viniferin glucoside (EVG)

Irena Roterman-Konieczna, Mateusz Banach, Zdzislaw Wisniowski, 2018, Bio Algorithms Med Syst..

Irena Roterman-Konieczna, Mateusz Banach, Leszek Konieczny, 2016, Bio Algorithms Med Syst..

Internal force field in proteins seen by divergence entropy

Mateusz Banach, Irena Roterman, Damian Marchewka, 2011, Bioinformation.

“Fuzzy oil drop” model verified positively

Mateusz Banach, Leszek Konieczny, Irena Roterman, 2011, Bioinformation.

Application of the Fuzzy Oil Drop Model Describes Amyloid as a Ribbonlike Micelle

Irena Roterman-Konieczna, Mateusz Banach, Leszek Konieczny, 2017, Entropy.

The variability of protein structure with respect to the hydrophobic core

Irena Roterman-Konieczna, Mateusz Banach, Zdzislaw Wisniowski, 2017, Bio Algorithms Med Syst..

Comparative Analysis of Techniques Oriented on the Recognition of Ligand Binding Area in Proteins

Irena Roterman-Konieczna, Mateusz Banach, Wiktor Jurkowski, 2013 .

Mechanism of ligand binding – PDZ domain taken as example

Irena Roterman-Konieczna, Mateusz Banach, Zdzislaw Wisniowski, 2017, Bio Algorithms Med Syst..

Fragment Aβ(18-41) presented within the CDR3 loop region of a shark immunoglobulin new antigen receptor single-variable domain antibody analyzed based on the fuzzy oil drop model

Irena Roterman-Konieczna, Mateusz Banach, Zdzislaw Wisniowski, 2018, Bio Algorithms Med Syst..

Application of Divergence Entropy to Characterize the Structure of the Hydrophobic Core in DNA Interacting Proteins

Irena Roterman-Konieczna, Mateusz Banach, Leszek Konieczny, 2015, Entropy.

Divergence Entropy-Based Evaluation of Hydrophobic Core in Aggressive and Resistant Forms of Transthyretin

Irena Roterman-Konieczna, Mateusz Banach, Leszek Konieczny, 2021, Entropy.

Contribution to the Prediction of the Fold Code: Application to Immunoglobulin and Flavodoxin Cases

Jacques Chomilier, Mateusz Banach, Irena Roterman, 2015, PloS one.

Ligand-binding-site recognition

Irena Roterman-Konieczna, Mateusz Banach, Leszek Konieczny, 2012 .

Intrinsically disordered proteins--relation to general model expressing the active role of the water environment.

Mateusz Banach, Leszek Konieczny, Irena Roterman, 2014, Advances in protein chemistry and structural biology.

SUPPLEMENT A

Mateusz Banach, Leszek Konieczny, Katarzyna Stapor, 2020 .

Fuzzy oil drop model to interpret the structure of antifreeze proteins and their mutants

Mateusz Banach, Leszek Konieczny, Wiktor Jurkowski, 2011, Journal of Molecular Modeling.

The Influence of Proteins Surface on the Ordering of Surrounded Water

Mateusz Banach, Leszek Konieczny, Irena Roterman, 2018, Superhydrophobic Surfaces - Fabrications to Practical Applications.

The fuzzy oil drop model, based on hydrophobicity density distribution, generalizes the influence of water environment on protein structure and function.

Mateusz Banach, Leszek Konieczny, Irena Roterman, 2014, Journal of theoretical biology.

6 – Use of the “fuzzy oil drop” model to identify the complexation area in protein homodimers

Mateusz Banach, Leszek Konieczny, I. Roterman-Konieczna, 2012 .

The late-stage intermediate

Irena Roterman-Konieczna, Mateusz Banach, Leszek Konieczny, 2012 .

Can the Structure of the Hydrophobic Core Determine the Complexation Site

Irena Roterman-Konieczna, Mateusz Banach, Leszek Konieczny, 2013 .

Intermediates in the Protein Folding Process: A Computational Model

Mateusz Banach, Leszek Konieczny, Wiktor Jurkowski, 2011, International journal of molecular sciences.

Chaperonin Structure – The Large Multi-Subunit Protein Complex

Mateusz Banach, Katarzyna Stąpor, Irena Roterman, 2009, International journal of molecular sciences.

The Amyloid as a Ribbon-Like Micelle in Contrast to Spherical Micelles Represented by Globular Proteins

Mateusz Banach, Leszek Konieczny, Irena Roterman, 2019, Molecules.

Antifreeze proteins

Mateusz Banach, Leszek Konieczny, Irena Roterman, 2017, Bioinformation.

The aqueous environment as an active participant in the protein folding process.

Mateusz Banach, Leszek Konieczny, Irena Roterman, 2019, Journal of molecular graphics & modelling.

Simulation of the Protein Folding Process

Mateusz Banach, Leszek Konieczny, Monika Piwowar, 2014 .

Filamentous Aggregates of Tau Proteins Fulfil Standard Amyloid Criteria Provided by the Fuzzy Oil Drop (FOD) Model

Mateusz Banach, Leszek Konieczny, Irena Roterman, 2018, International journal of molecular sciences.

The divergence entropy characterizing the internal force field in proteins

Irena Roterman-Konieczna, Mateusz Banach, Monika Piwowar, 2012 .

Different Synergy in Amyloids and Biologically Active Forms of Proteins

Mateusz Banach, Leszek Konieczny, Katarzyna Stapor, 2019, International journal of molecular sciences.

Structural role of exon-coded fragment of polypeptide chains in selected enzymes.

Mateusz Banach, Leszek Konieczny, Monika Piwowar, 2013, Journal of theoretical biology.