Daniel McDonald
发表
William A. Walters,
Jesse R. Zaneveld,
F. Bushman,
2010,
Nature Methods.
Francesco Asnicar,
Mingxun Wang,
Yang Bai,
2019,
Nature Biotechnology.
Stephanie L. Servetas,
Austin D. Swafford,
Christine M. Aceves,
2022,
Nature Biotechnology.
Karsten Zengler,
Rob Knight,
Conor Liston,
2018,
Nature Microbiology.
Katherine H. Huang,
Daniel D. Sommer,
Zhengyuan O. Wang,
2012,
Nature.
Katherine H. Huang,
Daniel D. Sommer,
Zhengyuan O. Wang,
2012,
Nature.
Francesco Asnicar,
Mingxun Wang,
Pieter C. Dorrestein,
2018
.
D. Jeste,
T. Kosciólek,
R. Knight,
2019,
Schizophrenia Research.
Jason M. Wood,
Ganesh Babu Malli Mohan,
R. Knight,
2019,
Microbiome.
Rob Knight,
Antonio Gonzalez,
Daniel McDonald,
2018,
Nature Methods.
Jesse R. Zaneveld,
C. Huttenhower,
J. Clemente,
2013,
Nature Biotechnology.
C. Huttenhower,
E. Franzosa,
R. Knight,
2017,
Nature.
Arthur Brady,
Michelle G. Giglio,
Jonathan Crabtree,
2017,
Nature.
Rick L. Stevens,
William A. Walters,
Nicole M. Gaudelli,
2017,
Nature.
Se Jin Song,
M. Yassour,
C. Huttenhower,
2014,
Cell host & microbe.
John H. Chase,
R. Knight,
J. Caporaso,
2016,
Microbiome.
Benjamin W. Frable,
E. Allen,
T. Michael,
2022,
Nature Communications.
Benjamin W. Frable,
E. Allen,
T. Michael,
2022,
bioRxiv.
R. Knight,
M. Hamady,
C. Lozupone,
2007,
Genome Biology.
R. Knight,
L. Laine,
R. Arsenescu,
2020,
Gastroenterology.
Mingxun Wang,
Rob Knight,
Evan Bolyen,
2018,
Nature Methods.
Rob Knight,
Pieter C. Dorrestein,
Hosein Mohimani,
2018,
mSystems.
Eric P. Nawrocki,
Alexander J. Probst,
R. Knight,
2011,
The ISME Journal.
Jesse R. Zaneveld,
R. Knight,
C. Lozupone,
2012,
RNA.
R. Knight,
P. Dorrestein,
D. McDonald,
2019,
BMC Biology.
Antonio Gonzalez,
R. Knight,
H. Holscher,
2023,
The Journal of nutrition.
Jesse R. Zaneveld,
R. Knight,
A. Heath,
2011,
Proceedings of the National Academy of Sciences.
William A. Walters,
R. Knight,
J. Caporaso,
2013,
Biology & Philosophy.
Marcus W. Fedarko,
R. Knight,
D. McDonald,
2020,
mSphere.
Se Jin Song,
W. Thompson,
Lingjing Jiang,
2021,
Med.
Antonio Gonzalez,
George Armstrong,
R. Knight,
2022,
Frontiers in Bioinformatics.
K. North,
Jianwen Cai,
R. Burk,
2021,
Genome Biology.
K. North,
Jianwen Cai,
R. Burk,
2021,
Genome biology.
N. Schneiderman,
R. Knight,
K. North,
2019,
Genome Biology.
J. Metcalf,
R. Knight,
N. Dominy,
2019,
Genome Biology.
Rob Knight,
Daniel McDonald,
Scott T. Kelley,
2019,
mSystems.
Austin D. Swafford,
R. Knight,
R. Ley,
2019,
mSystems.
Regional variation limits applications of healthy gut microbiome reference ranges and disease models
Rob Knight,
Daniel McDonald,
Jeroen Raes,
2018,
Nature Medicine.
Se Jin Song,
R. Knight,
P. Dorrestein,
2018,
Current opinion in microbiology.
Rob Knight,
Siavash Mirarab,
Antonio Gonzalez,
2018,
mSystems.
Justine W. Debelius,
R. Knight,
M. Sogin,
2017,
Annual review of genomics and human genetics.
Jose A Navas-Molina,
James T. Morton,
Justine W. Debelius,
2017,
mSystems.
R. Knight,
K. Godfrey,
S. Peddada,
2016,
Microbiome.
Rob Knight,
Daniel McDonald,
Gail Ackermann,
2016,
mSphere.
Justine W. Debelius,
R. Knight,
D. McDonald,
2016,
Journal of microbiology & biology education.
R. Knight,
D. McDonald,
A. Birmingham,
2015,
Microbiome.
Justine W. Debelius,
R. Knight,
J. Gilbert,
2015,
Microbial ecology in health and disease.
Antonio Gonzalez,
Jack A. Gilbert,
Yan He,
2014,
PeerJ.
William A. Walters,
Jose A Navas-Molina,
Susan M. Huse,
2014
.
Austin D. Swafford,
V. Salomaa,
M. Inouye,
2022,
mSystems.
Jose A Navas-Molina,
Luke R. Thompson,
James T. Morton,
2017,
mSystems.
Lisa M Bramer,
Rob Knight,
Antonio Gonzalez,
2017,
Nature Microbiology.
Andreas Wilke,
Folker Meyer,
Rob Knight,
2012,
GigaScience.
William A. Walters,
Ahmad Turan Naimey,
Lasse Buur Rasmussen,
2019,
Nature Biotechnology.
Se Jin Song,
Luke R. Thompson,
James T. Morton,
2022,
Nature Microbiology.
Se Jin Song,
J. Tap,
H. Koutnikova,
2021,
The American journal of clinical nutrition.
R. Knight,
P. Wischmeyer,
Daniel McDonald,
2016,
Current opinion in critical care.
Rob Knight,
Daniel McDonald,
M D Betterton,
2008,
Biology Direct.
R. Knight,
M. Humbert,
C. Lozupone,
2012,
AIDS research and human retroviruses.
R. Burk,
Y. Vázquez-Baeza,
Q. Qi,
2023,
Cell reports methods.
R. Knight,
Qiyun Zhu,
R. Kirkegaard,
2021,
Nature Methods.
Jose A Navas-Molina,
Se Jin Song,
James T. Morton,
2017,
mSystems.
William A. Walters,
Se Jin Song,
N. Fierer,
2012
.
Luke R. Thompson,
James T. Morton,
Justine W. Debelius,
2018,
Nature Reviews Microbiology.
Francesco Asnicar,
Rob Knight,
Dan Knights,
2019,
Nature Communications.
Rob Knight,
Daniel McDonald,
J. Gregory Caporaso,
2015
.
R. Knight,
A. Birmingham,
Daniel McDonald,
2015,
Microbiome.
R. Knight,
N. Fierer,
C. Lozupone,
2010,
Nature Methods.
R. Knight,
N. Fierer,
C. Lauber,
2010,
Proceedings of the National Academy of Sciences.
Christine M. Aceves,
Kristian G. Andersen,
S. Kingsmore,
2022,
Nature.
Christine M. Aceves,
Kristian G. Andersen,
S. Kingsmore,
2021,
medRxiv.
Austin D. Swafford,
V. Salomaa,
M. Inouye,
2021,
bioRxiv.
Eran Halperin,
Rob Knight,
Liat Shenhav,
2020,
Nature Biotechnology.
Colin J. Brislawn,
Matthew R. Dillon,
Jose A. Navas-Molina,
2018,
Nature Methods.
Francesco Asnicar,
Mingxun Wang,
Yang Bai,
2019,
Nature Biotechnology.
R. Knight,
N. Pace,
H. Tufo,
2012,
The ISME Journal.
Manuel E. Lladser,
Rob Knight,
Von Bing Yap,
2008,
BMC Bioinformatics.
Se Jin Song,
Bryn C. Taylor,
R. Knight,
2020,
mSystems.
James T. Morton,
R. Knight,
J. Sanders,
2018,
Nature Microbiology.
Qiyun Zhu,
Rob Knight,
Daniel McDonald,
2018,
Nature Microbiology.
Austin D. Swafford,
Emily C. Gentry,
Kelly C. Weldon,
2020,
mSystems.
Rob Knight,
Antonio Gonzalez,
Daniel McDonald,
2020,
mSystems.
R. Knight,
R. Schooley,
P. Dorrestein,
2021,
Microbiome.
Rob Knight,
Pieter C. Dorrestein,
Daniel McDonald,
2018,
mSystems.
Justin J. J. van der Hooft,
Mingxun Wang,
Pieter C. Dorrestein,
2020,
Nature Chemical Biology.
Justin J.J. van der Hooft,
Jo Handelsman,
Mingxun Wang,
2020,
bioRxiv.
Se Jin Song,
Luke R. Thompson,
James T. Morton,
2021
.
J. Raes,
R. Knight,
Yan He,
2018,
Nature Network Boston.
Christopher E. McKinlay,
R. Knight,
D. McDonald,
2014,
Cell host & microbe.
Rohit Loomba,
Rob Knight,
Daniel McDonald,
2019,
Clinical gastroenterology and hepatology : the official clinical practice journal of the American Gastroenterological Association.
L. Ursell,
R. Knight,
Simon Chang,
2014,
Antiviral research.
Emmanuel O. Elijah,
P. Dorrestein,
R. Knight,
2021,
mSystems.
Regional variation limits applications of healthy gut microbiome reference ranges and disease models
J. Raes,
R. Knight,
Yan He,
2018,
Nature Medicine.
Austin D. Swafford,
Carolina S. Carpenter,
R. Knight,
2021,
Microbiome.
Austin D. Swafford,
Carolina S. Carpenter,
R. Knight,
2020,
Microbiome.
Austin D. Swafford,
Carolina S. Carpenter,
R. Knight,
2020,
Research square.
Morgan W. Panitchpakdi,
Austin D. Swafford,
Christine M. Aceves,
2020,
bioRxiv.
Bryn C. Taylor,
R. Knight,
E. Lukacz,
2021,
Female pelvic medicine & reconstructive surgery.
Se Jin Song,
James T. Sorrentino,
Austin D. Swafford,
2020,
bioRxiv.
Kristen L. Beck,
L. Parida,
G. Ackermann,
2021,
Microbiome.
Se Jin Song,
Luke R. Thompson,
James T. Morton,
2022,
bioRxiv.
Rob Knight,
Antonio Gonzalez,
Daniel McDonald,
2019,
mSystems.
Jason M. Wood,
Ganesh Babu Malli Mohan,
R. Knight,
2019,
Microbiome.
Se Jin Song,
R. Knight,
G. Ackermann,
2021,
mSystems.
Rob Knight,
Qiyun Zhu,
Evan Bolyen,
2020,
Current protocols in bioinformatics.
R. Knight,
L. Smarr,
D. McDonald,
2017,
Methods of Information in Medicine.
Rob Knight,
Laura Wegener Parfrey,
Daniel McDonald,
2013,
Standards in genomic sciences.
Amnon Amir,
Rob Knight,
Daniel McDonald,
2019,
mSystems.
Laxmi Parida,
Anna Paola Carrieri,
Rob Knight,
2021,
mSystems.
Austin D. Swafford,
Kristen L. Beck,
V. Salomaa,
2021,
Genome research.
James T. Morton,
Austin D. Swafford,
E. Halperin,
2020,
Nature Biotechnology.
Benjamin D. Kaehler,
Nicholas A. Bokulich,
R. Knight,
2019,
Nature Communications.
Se Jin Song,
Austin D. Swafford,
Antonio Gonzalez,
2022,
mSystems.
Se Jin Song,
D. McDonald,
R. Knight,
2022,
Frontiers in Nutrition.
S. Mirarab,
R. Knight,
Yueyu Jiang,
2023,
bioRxiv.
Jose A Navas-Molina,
James T. Morton,
Jose A. Navas-Molina,
2017,
Cell host & microbe.
Scott R. Klemmer,
Daniel McDonald,
Scott Klemmer,
2021,
CHI.
Kristen L. Beck,
R. Knight,
J. Gilbert,
2020,
medRxiv.
Austin D. Swafford,
Kelly C. Weldon,
Bryn C. Taylor,
2020,
mSystems.
John T. Chang,
R. Knight,
D. McDonald,
2020
.
Se Jin Song,
Donovan H. Parks,
James T. Morton,
2023,
bioRxiv.
William A. Walters,
R. Knight,
J. Caporaso,
2013,
Biology & philosophy.
Brittany D. Needham,
R. Xavier,
Mingbang Wang,
2023,
Nature Neuroscience.
Se Jin Song,
E. Lukacz,
D. McDonald,
2022,
bioRxiv.
Austin D. Swafford,
Carolina S. Carpenter,
Kenneth E Curewitz,
2022,
mSystems.
Se Jin Song,
J. Tap,
M. Pichaud,
2023,
Nature communications.
Anna Paola Carrieri,
Pieter C. Dorrestein,
Rob Knight,
2020,
bioRxiv.
R. Knight,
Antonio Gonzalez,
D. Koslicki,
2018,
Nature Methods.
Rob Knight,
Daniel McDonald,
Jesse Stombaugh,
2011,
Bioinform..
R. Knight,
I. Majerfeld,
J. Chocholousová,
2010,
RNA.
William A. Walters,
R. Knight,
B. Granger,
2012,
The ISME Journal.
R. Knight,
M. Betterton,
L. Waterbury,
2008,
Biology direct.
James R. Foulds,
Se Jin Song,
James T. Morton,
2021,
Nature methods.
N. Schneiderman,
K. North,
R. Burk,
2019,
Genome Biology.
Se Jin Song,
Luke R. Thompson,
James T. Morton,
2021
.
Sara L. Jackrel,
Emily C. Gentry,
Allegra T. Aron,
2023,
bioRxiv.
Se Jin Song,
Donovan H. Parks,
James T. Morton,
2023,
Nature Biotechnology.
I. Sfiligoi,
D. McDonald,
Antonio Gonzalez,
2022,
mSystems.
Igor Sfiligoi,
Rob Knight,
Daniel McDonald,
2021,
2021 IEEE 17th International Conference on eScience (eScience).
Igor Sfiligoi,
Daniel McDonald,
Rob Knight,
2021,
PEARC.
Austin D. Swafford,
Carolina S. Carpenter,
E. Allen,
2020,
Research Square.
Igor Sfiligoi,
Rob Knight,
Daniel McDonald,
2020,
ArXiv.
R. Knight,
I. Sfiligoi,
Daniel McDonald,
2020,
PEARC.
R. Knight,
D. McDonald,
Antonio Gonzalez,
2019,
mBio.
Zheng Sun,
Rob Knight,
Antonio Gonzalez,
2018,
mBio.
Gavin A. Huttley,
J. Gregory Caporaso,
Benjamin D. Kaehler,
2018,
bioRxiv.
Scalable power analysis and effect size exploration of microbiome community differences with Evident
S. Peddada,
D. McDonald,
Y. Vázquez-Baeza,
2022,
bioRxiv.
Se Jin Song,
D. McDonald,
Y. Vázquez-Baeza,
2022,
mSystems.
S. Mirarab,
Qiyun Zhu,
M. Balaban,
2023,
Nature biotechnology.
Y. Vázquez-Baeza,
Lingjing Jiang,
R. Knight,
2023,
Genes.
R. Knight,
D. McDonald,
Jianwen Cai,
2020
.
Austin D. Swafford,
Carolina S. Carpenter,
D. McDonald,
2020,
medRxiv.
N. Schneiderman,
K. North,
R. Burk,
2020
.
M. Betterton,
L. Waterbury,
Daniel McDonald,
2008,
Biology direct.
Luke R. Thompson,
James T. Morton,
Justine W. Debelius,
2018,
Nature Reviews Microbiology.
Justine W. Debelius,
M. Sogin,
Embriette R. Hyde,
2017,
Annual review of genomics and human genetics.
V. B. Yap,
G. Huttley,
M. Lladser,
2008,
BMC Bioinformatics.
John H. Chase,
J. Caporaso,
S. Kelley,
2016,
Microbiome.
Justine W. Debelius,
Y. Vázquez-Baeza,
Z. Xu,
2016,
Journal of microbiology & biology education.
N. Fierer,
C. Lozupone,
Justin Kuczynski,
2010,
Nature Methods.
Se Jin Song,
Donovan H. Parks,
V. Salomaa,
2023,
Nature Biotechnology.
L. Ursell,
Simon Chang,
Antonio Gonzalez,
2014,
Antiviral research.
R. Knight,
S. Mehta,
J. Finkelstein,
2021,
Annual review of nutrition.