Martha L. Bulyk

发表

ModuleFinder: A Tool for Computational Discovery of Cis Regulatory Modules

Anthony A. Philippakis, Fangxue Sherry He, Martha L. Bulyk, 2004, Pacific Symposium on Biocomputing.

UniPROBE, update 2011: expanded content and search tools in the online database of protein-binding microarray data on protein–DNA interactions

Martha L. Bulyk, Kimberly Robasky, K. Robasky, 2010, Nucleic Acids Res..

Design of Compact, Universal DNA Microarrays for Protein Binding Microarray Experiments

Anthony A. Philippakis, Martha L. Bulyk, Aaron M. Qureshi, 2007, RECOMB.

Meta-analysis discovery of tissue-specific DNA sequence motifs from mammalian gene expression data

Martha L. Bulyk, Bertrand R. Huber, M. Bulyk, 2006, BMC Bioinformatics.

Identification of Cell Cycle-Regulated, Putative Hyphal Genes in Candida Albicans

Martha L. Bulyk, Saumyadipta Pyne, Raluca Gordân, 2012, Pacific Symposium on Biocomputing.

PROTEIN-NUCLEIC ACID INTERACTIONS: INTEGRATING STRUCTURE, SEQUENCE, AND FUNCTION – Session Introduction

Ernest Fraenkel, Martha L. Bulyk, Alexander J. Hartemink, 2007 .

Functional Trends in Structural Classes of the DNA Binding Domains of Regulatory Transcription Factors

Martha L. Bulyk, Rachel Patton McCord, 2008, Pacific Symposium on Biocomputing.

Predicting the binding preference of transcription factors to individual DNA k-mers

Anthony A. Philippakis, Martha L. Bulyk, Quaid Morris, 2009, Bioinform..

Expression-Guided In Silico Evaluation of Candidate Cis Regulatory Codes for Drosophila Muscle Founder Cells

Anthony A. Philippakis, Fangxue Sherry He, Martha L. Bulyk, 2006, PLoS Comput. Biol..

Design of Compact, Universal DNA Microarrays for Protein Binding Microarray Experiments

Anthony A. Philippakis, Martha L. Bulyk, Aaron M. Qureshi, 2007, RECOMB.

Bayesian hierarchical model of protein-binding microarray k-mer data reduces noise and identifies transcription factor subclasses and preferred k-mers

Martha L. Bulyk, Bo Jiang, Jun S. Liu, 2013, Bioinform..

Intrinsic Disorder Within and Flanking the DNA-Binding Domains of Human Transcription Factors

Xin Guo, Martha L. Bulyk, Alexander J. Hartemink, 2011, Pacific Symposium on Biocomputing.

UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein–DNA interactions

Martha L. Bulyk, Stephen S. Gisselbrecht, Maxwell A. Hume, 2014, Nucleic Acids Res..

UniPROBE: an online database of protein binding microarray data on protein–DNA interactions

Martha L. Bulyk, Daniel E. Newburger, M. Bulyk, 2008, Nucleic Acids Res..

Reading between the genes: interpreting non-coding DNA in high-throughput

Jason H. Moore, Martha L. Bulyk, Yves A. Lussier, 2019, PSB.

LOESS correction for length variation in gene set-based genomic sequence analysis

Martha L. Bulyk, Anton Aboukhalil, M. Bulyk, 2012, Bioinform..

Distinguishing Direct versus Indirect Transcription Factor-DNA Interactions

Martha L. Bulyk, Alexander J. Hartemink, Raluca Gordân, 2010, RECOMB.

Direct Promoter Repression by BCL11A Controls the Fetal to Adult Hemoglobin Switch

Martha L. Bulyk, Guo-Cheng Yuan, Qian Zhu, 2018, Cell.

LUX ARRHYTHMO Encodes a Nighttime Repressor of Circadian Gene Expression in the Arabidopsis Core Clock

Martha L. Bulyk, Steve A. Kay, Andrew R. Gehrke, 2011, Current Biology.

Quantifying DNA–protein interactions by double-stranded DNA arrays

Martha L. Bulyk, George M. Church, David J. Lockhart, 1999, Nature Biotechnology.

Molecular mechanism underlying the regulatory specificity of a Drosophila homeodomain protein that specifies myoblast identity

Martha L. Bulyk, Michael F. Berger, Brian W. Busser, 2012, Development.

Computational comparison of two draft sequences of the human genome

Martha L. Bulyk, Jay Shendure, George M. Church, 2001, Nature.

CellMapper: rapid and accurate inference of gene expression in difficult-to-isolate cell types

Martha L. Bulyk, Levi Waldron, Curtis Huttenhower, 2016, Genome Biology.

Machine learning classification of cell-specific cardiac enhancers uncovers developmental subnetworks regulating progenitor cell division and cell fate specification

Martha L. Bulyk, Ivan Ovcharenko, Neal Jeffries, 2014, Development.

transcription factors High-resolution DNA-binding specificity analysis of yeast Material Supplemental

Anthony A. Philippakis, Martha L. Bulyk, Yanhui Hu, 2009 .

Modular Evolution of DNA-Binding Preference of a Tbrain Transcription Factor Provides a Mechanism for Modifying Gene Regulatory Networks

Martha L. Bulyk, Veronica F. Hinman, M. Bulyk, 2014, Molecular biology and evolution.

Notch and MAML-1 Complexation Do Not Detectably Alter the DNA Binding Specificity of the Transcription Factor CSL

Martha L. Bulyk, Stephen C. Blacklow, Michael F. Berger, 2010, PloS one.

An Evolutionarily Conserved Enhancer Regulates Bmp4 Expression in Developing Incisor and Limb Bud

Martha L. Bulyk, Joshua W. K. Ho, Bjorn R. Olsen, 2012, PloS one.

DNA-binding specificity changes in the evolution of forkhead transcription factors

Martha L. Bulyk, So Nakagawa, Stephen S. Gisselbrecht, 2013, Proceedings of the National Academy of Sciences.

Using a structural and logics systems approach to infer bHLH–DNA binding specificity determinants

Martha L. Bulyk, Andreu Alibés, Christian A. Grove, 2011, Nucleic acids research.

Highly parallel assays of tissue-specific enhancers in whole Drosophila embryos

Martha L. Bulyk, Brian W. Busser, Stephen S. Gisselbrecht, 2013, Nature Methods.

Meta-Profiles of Gene Expression during Aging: Limited Similarities between Mouse and Human and an Unexpectedly Decreased Inflammatory Signature

Martha L. Bulyk, Andrew Johnston, William R. Swindell, 2012, PloS one.