Herbert Sauro

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Faculty Opinions recommendation of A combined experimental and modelling approach for the Weimberg pathway optimisation.

Herbert Sauro, 2020 .

F1000Prime recommendation of Boolean modeling in systems biology: an overview of methodology and applications.

Herbert Sauro, 2019 .

Introduction to the Systems Biology Workbench

Michael Hucka, Andrew Finney, Hamid Bolouri, 2003 .

F1000Prime recommendation of Semantics-Based Composition of Integrated Cardiomyocyte Models Motivated by Real-World Use Cases.

Herbert Sauro, 2019 .

Data Integration and Mining for Synthetic Biology Design.

Matthew R. Pocock, Phillip Lord, James Alastair McLaughlin, 2016, ACS synthetic biology.

Synthetic Biology Open Language (SBOL) Version 2.0.0

Zhen Zhang, Jacob Beal, Matthew R. Pocock, 2015, J. Integr. Bioinform..

Synthetic Biology Open Language Visual (SBOL Visual) Version 2.0

Jacob Beal, Robert Sidney Cox, James McLaughlin, 2018, J. Integr. Bioinform..

SYNTHETIC SYSTEMS AS MICROBIAL THREATS: PREDICTABILITY OF LOSS-OF-FUNCTION MUTATIONS IN ENGINEERED SYSTEMS

Bryan Bartley, Sean C. Sleight, Herbert Sauro, 2011 .

Synthetic Biology Open Language Visual (SBOL Visual) Version 2.1

Robert Sidney Cox, James McLaughlin, Bryan Bartley, 2019, J. Integr. Bioinform..

F1000Prime recommendation of BioNetGen 2.2: advances in rule-based modeling.

Herbert Sauro, 2019 .

F1000Prime recommendation of Reproducibility in computational neuroscience models and simulations.

Herbert Sauro, 2019 .

Synthetic biology: How best to build a cell.

Martin Fussenegger, Ron Weiss, James J Collins, 2014, Nature.

Communicating Structure and Function in Synthetic Biology Diagrams.

Jacob Beal, James Alastair McLaughlin, Bryan Bartley, 2019, ACS synthetic biology.

F1000Prime recommendation of Toward Community Standards and Software for Whole-Cell Modeling.

Herbert Sauro, 2019 .

Erratum: The Systems Biology Graphical Notation

Samik Ghosh, Yukiko Matsuoka, Hiroaki Kitano, 2009, Nature Biotechnology.

F1000Prime recommendation of Integrating systems biology models and biomedical ontologies.

Herbert Sauro, 2019 .

Proposed data model for the next version of the synthetic biology open language.

Jacob Beal, Matthew R. Pocock, Goksel Misirli, 2015, ACS synthetic biology.

Synthetic Biology Open Language (SBOL) Version 2.1.0

Zhen Zhang, Jacob Beal, Matthew R. Pocock, 2012, Journal of integrative bioinformatics.

F1000Prime recommendation of Ten simple rules for reproducible computational research.

Herbert Sauro, 2019 .

F1000Prime recommendation of Reproducible computational biology experiments with SED-ML--the Simulation Experiment Description Markup Language.

Herbert Sauro, 2019 .

F1000Prime recommendation of Emerging whole-cell modeling principles and methods.

Herbert Sauro, 2019 .

Faculty of 1000 evaluation for Could a neuroscientist understand a microprocessor

Herbert Sauro, 2018 .

Synthetic Biology Open Language (SBOL) Version 2.3

Matthew R. Pocock, John H. Gennari, Robert Sidney Cox, 2019, J. Integr. Bioinform..

The simulation experiment description markup language (SED-ML): language specification for level 1 version 4

Dagmar Waltemath, Alan Garny, Jonathan R. Karr, 2021, J. Integr. Bioinform..

Synthetic biology open language visual (SBOL Visual) version 2.3

Jacob Beal, Matthew R. Pocock, Robert Sidney Cox, 2021, J. Integr. Bioinform..

BBF RFC 31 : Provisional BioBrick Language ( PoBoL )

Raik Grünberg, Mackenzie Cowell, Deepak Chandran, 2009 .

Synthetic biology open language visual (SBOL visual) version 2.2

Jacob Beal, Matthew R. Pocock, Robert Sidney Cox, 2020, J. Integr. Bioinform..