Matthew D. MacManes

发表

On the optimal trimming of high-throughput mRNA sequence data

Matthew D. MacManes, M. MacManes, 2014, Front. Genet..

The Oyster River Protocol: A Multi Assembler and Kmer Approach For de novo Transcriptome Assembly

Matthew D. MacManes, M. MacManes, 2017, bioRxiv.

PALADIN: protein alignment for functional profiling whole metagenome shotgun data

R. Daniel Bergeron, Anthony Westbrook, Matthew D. MacManes, 2016, bioRxiv.

On the optimal trimming of high-throughput mRNA sequence data

Matthew D. MacManes, 2013 .

Establishing evidenced-based best practice for the de novo assembly and evaluation of transcriptomes from non-model organisms

Matthew D. MacManes, M. MacManes, 2015, bioRxiv.

Improving transcriptome assembly through error correction of high-throughput sequence reads

Michael B. Eisen, Matthew D. MacManes, M. Eisen, 2013, PeerJ.

De novo transcript sequence reconstruction from RNA-Seq: reference generation and analysis with Trinity

Michael Ott, Nir Friedman, Aviv Regev, 2013 .

Characterization of the transcriptome, nucleotide sequence polymorphism, and natural selection in the desert adapted mouse Peromyscus eremicus

Michael B. Eisen, Matthew D. MacManes, M. Eisen, 2014, bioRxiv.