Yi Xing

发表

Deep-learning augmented RNA-seq analysis of transcript splicing

Yingnian Wu, Zijun Zhang, Zhicheng Pan, 2019, Nature Methods.

TideHunter: efficient and sensitive tandem repeat detection from noisy long-reads using seed-and-chain

Yi Xing, Bo Liu, Yadong Wang, 2019, Bioinform..

“Radiotranscriptomics”: A synergy of imaging and transcriptomics in clinical assessment

Yi Xing, William Hsu, Amal Katrib, 2016, Quantitative Biology.

rMATS: Robust and flexible detection of differential alternative splicing from replicate RNA-Seq data

Lan Lin, Ying Nian Wu, Yi Xing, 2014, Proceedings of the National Academy of Sciences.

Transcriptome landscape of the human placenta

Yi Xing, Keyan Zhao, Jeffrey C Murray, 2012, BMC Genomics.

The multiassembly problem: reconstructing multiple transcript isoforms from EST fragment mixtures.

Yi Xing, Christopher J. Lee, Christopher Lee, 2004, Genome research.

Transcriptome-wide analyses of CstF64–RNA interactions in global regulation of mRNA alternative polyadenylation

Ji Wan, Yi Xing, Lingjie Weng, 2012, Proceedings of the National Academy of Sciences.

Genomic analysis of RNA alternative splicing in cancers.

Yi Xing, Y. Xing, Yi Xing, 2007, Frontiers in bioscience : a journal and virtual library.

Widespread production of novel soluble protein isoforms by alternative splicing removal of transmembrane anchoring domains

Yi Xing, Christopher J. Lee, Christopher Lee, 2003, FEBS letters.

Negative selection pressure against premature protein truncation is reduced by both alternative splicing and diploidy

Yi Xing, Christopher J. Lee, Christopher Lee, 2004, Genome Biology.

Rbfox Proteins Regulate Splicing as Part of a Large Multiprotein Complex LASR

Yi Xing, Kelsey C. Martin, Douglas L. Black, 2016, Cell.

MADS: a new and improved method for analysis of differential alternative splicing by exon-tiling microarrays.

Hui Jiang, Douglas L Black, Yi Xing, 2008, RNA.

Novel functions of the phosphatidylinositol metabolic pathway discovered by a chemical genomics screen with wortmannin

Yi Xing, Wei Zou, Jing Huang, 2003, Proceedings of the National Academy of Sciences of the United States of America.

Using high-density exon arrays to profile gene expression in closely related species

Junhee Seok, Yi Xing, Wing Hung Wong, 2009, Nucleic acids research.

Determination of a Comprehensive Alternative Splicing Regulatory Network and Combinatorial Regulation by Key Factors during the Epithelial-to-Mesenchymal Transition

Yi Xing, Yang Guo, Claude C. Warzecha, 2016, Molecular and Cellular Biology.

An ESRP‐regulated splicing programme is abrogated during the epithelial–mesenchymal transition

Yi Xing, Shihao Shen, Claude C. Warzecha, 2010, The EMBO journal.

Structure and activity of putative intronic miRNA promoters.

Ji Wan, Yi Xing, Ryan M Spengler, 2010, RNA.

Transcriptome sequencing reveals aberrant alternative splicing in Huntington's disease.

Yi Xing, Shihao Shen, Olga Pletnikova, 2016, Human molecular genetics.

CLIP-seq analysis of multi-mapped reads discovers novel functional RNA regulatory sites in the human transcriptome

Yi Xing, Zijun Zhang, Zijun Zhang, 2017, Nucleic acids research.

Exon arrays provide accurate assessments of gene expression

Yi Xing, Wing Hung Wong, Karen Kapur, 2007, Genome Biology.

Genome-Wide Maps of m6A circRNAs Identify Widespread and Cell-Type-Specific Methylation Patterns that Are Distinct from mRNAs.

Yi Xing, Nicholas Van Wittenberghe, Y. Xing, 2017, Cell reports.

Adenosine deamination in human transcripts generates novel microRNA binding sites

Yi Xing, Debashish Bhattacharya, Glen M. Borchert, 2009, Human molecular genetics.

Evolutionary Divergence of Exon Flanks: A Dissection of Mutability and Selection

Yi Xing, Christopher J. Lee, Christopher Lee, 2006, Genetics.

m(6)A RNA modification controls cell fate transition in mammalian embryonic stem cells.

Yi Xing, Howard Y. Chang, Marius Wernig, 2014, Cell stem cell.

Transcriptome-wide Discovery of microRNA Binding Sites in Human Brain

Yi Xing, Christopher A. Ross, Brian L. Gilmore, 2014, Neuron.

GLiMMPS: robust statistical model for regulatory variation of alternative splicing using RNA-seq data

Yi Xing, Keyan Zhao, Qing Zhou, 2013, Genome Biology.

Global analysis of alternative splicing differences between humans and chimpanzees.

Yi Xing, Christopher J. Lee, Xinshu Xiao, 2007, Genes & development.

Chromatin and epigenetic regulation of pre-mRNA processing.

Yi Xing, Peter Stoilov, P. Stoilov, 2012, Human molecular genetics.

Population and allelic variation of A-to-I RNA editing in human transcriptomes

Yi Xing, Shihao Shen, Levon Demirdjian, 2017, Genome Biology.

Transcriptome-wide Landscape of Pre-mRNA Alternative Splicing Associated with Metastatic Colonization

Yi Xing, Shihao Shen, Michael D. Henry, 2014, Molecular Cancer Research.

αCP binding to a cytosine-rich subset of polypyrimidine tracts drives a novel pathway of cassette exon splicing in the mammalian transcriptome

Yi Xing, Juw Won Park, Y. Xing, 2016, Nucleic acids research.

Assessing the impact of alternative splicing on domain interactions in the human proteome.

Yi Xing, Christopher J. Lee, Robert Riley, 2004, Journal of proteome research.

Diverse Splicing Patterns of Exonized Alu Elements in Human Tissues

Yi Xing, Shihao Shen, Beverly L. Davidson, 2008, PLoS genetics.

Discovery of Allele-Specific Protein-RNA Interactions in Human Transcriptomes

Yi Xing, Emad Bahrami-Samani, Emad Bahrami-Samani, 2018, bioRxiv.

Evidence for a subpopulation of conserved alternative splicing events under selection pressure for protein reading frame preservation.

Yi Xing, Christopher J. Lee, Alexander Alekseyenko, 2004, Nucleic acids research.

Depolarization and CaM Kinase IV Modulate NMDA Receptor Splicing through Two Essential RNA Elements

Douglas L Black, Yi Xing, Christopher J. Lee, 2007, PLoS biology.

m6A-LAIC-seq reveals the census and complexity of the m6A epitranscriptome

Yi Xing, Peter Dedon, Nicholas Van Wittenberghe, 2016, Nature Methods.

Genetic variation of pre‐mRNA alternative splicing in human populations

Yi Xing, Zhi-xiang Lu, Peng Jiang, 2012, Wiley interdisciplinary reviews. RNA.

An expectation-maximization algorithm for probabilistic reconstructions of full-length isoforms from splice graphs

Yi Xing, Christopher J. Lee, Christopher Lee, 2006, Nucleic acids research.

Evidence of functional selection pressure for alternative splicingevents that accelerate evolution of protein subsequences

Yi Xing, Christopher J. Lee, Christopher Lee, 2005, Genome Biology.

Genome-Wide Determination of a Broad ESRP-Regulated Posttranscriptional Network by High-Throughput Sequencing

Ji Wan, Yi Xing, Shihao Shen, 2012, Molecular and Cellular Biology.

The nuclear experience of CPEB: implications for RNA processing and translational control.

Yi Xing, Shihao Shen, Shihao Shen, 2010, RNA.

The Bifunctional microRNA miR-9/miR-9* Regulates REST and CoREST and Is Downregulated in Huntington's Disease

Yi Xing, Lesley Jones, Y. Xing, 2008, The Journal of Neuroscience.