S. Nishi

发表

Culture-independent method for identification of microbial enzyme-encoding genes by activity-based single-cell sequencing using a water-in-oil microdroplet platform

Shuichi Shoji, Dong Hyun Yoon, Tetsushi Sekiguchi, 2016, Scientific Reports.

Planktotalealamellibrachiae sp. nov., isolated from a marine organism in Kagoshima Bay, Japan.

Y. Nogi, S. Koyama, S. Nishi, 2017, International journal of systematic and evolutionary microbiology.

Combination of six enzymes of a marine Novosphingobium converts the stereoisomers of β-O-4 lignin model dimers into the respective monomers

Y. Hatada, Y. Ohta, Ryoichi Hasegawa, 2015, Scientific Reports.

Thermoadaptation trait revealed by the genome sequence of thermophilic Geobacillus kaustophilus.

Ikuo Uchiyama, Shigeru Shimamura, Hideto Takami, 2004, Nucleic acids research.

Insights into the evolution of Archaea and eukaryotic protein modifier systems revealed by the genome of a novel archaeal group

M. Hattori, A. Kanai, Junichi Sugahara, 2010, Nucleic acids research.

Intragenomic diversity of the V1 regions of 16S rRNA genes in high-alkaline protease-producing Bacillus clausii spp

K. Ozaki, Tohru Kobayashi, S. Ito, 2007, Extremophiles.

Genomic characterization of thermophilic Geobacillus species isolated from the deepest sea mud of the Mariana Trench

H. Takami, Y. Takaki, S. Shimamura, 2004, Extremophiles.

Biotransformation of the high-molecular weight polycyclic aromatic hydrocarbon (PAH) benzo[k]fluoranthene by Sphingobium sp. strain KK22 and identification of new products of non-alternant PAH biodegradation by liquid chromatography electrospray ionization tandem mass spectrometry

Y. Ozeki, R. Kanaly, Shinro Nishi, 2013, Microbial biotechnology.

Quantitative Viral Community DNA Analysis Reveals the Dominance of Single-Stranded DNA Viruses in Offshore Upper Bathyal Sediment from Tohoku, Japan

Syun-ichi Urayama, Mitsuhiro Yoshida, Tomohiro Mochizuki, 2018, Front. Microbiol..

Unveiling the RNA virosphere associated with marine microorganisms

Syun-ichi Urayama, Yukari Yoshida-Takashima, Shinro Nishi, 2018, Molecular ecology resources.

Library Construction from Subnanogram DNA for Pelagic Sea Water and Deep-Sea Sediments

M. Sunamura, Shinro Nishi, Miho Hirai, 2017, Microbes and environments.

Fungal diversity in deep-sea sediments associated with asphalt seeps at the Sao Paulo Plateau

V. Pellizari, K. Fujikura, A. O. Lima, 2017 .

A Deeply Branching Thermophilic Bacterium with an Ancient Acetyl-CoA Pathway Dominates a Subsurface Ecosystem

M. Hattori, T. Itoh, A. Toyoda, 2012, PloS one.

Genetic and functional properties of uncultivated thermophilic crenarchaeotes from a subsurface gold mine as revealed by analysis of genome fragments.

Yohey Suzuki, K. Nealson, K. Horikoshi, 2005, Environmental microbiology.

Reduced Genome of the Thioautotrophic Intracellular Symbiont in a Deep-Sea Clam, Calyptogena okutanii

Shigeru Shimamura, Chiaki Kato, Ikunoshin Kato, 2007, Current Biology.

High frequency of phylogenetically diverse reductive dehalogenase-homologous genes in deep subseafloor sedimentary metagenomes

A. Fujiyama, A. Toyoda, H. Takami, 2014, Front. Microbiol..

Complete Genome Sequence of Altererythrobacter sp. Strain B11, an Aromatic Monomer-Degrading Bacterium, Isolated from Deep-Sea Sediment under the Seabed off Kashima, Japan

H. Takami, S. Ishii, Wataru Arai, 2018, Genome Announcements.

Electrical Retrieval of Living Microorganisms from Cryopreserved Marine Sponges Using a Potential-Controlled Electrode

Y. Fujiwara, Y. Hatada, Yuji Ise, 2015, Marine Biotechnology.

Chemical and genomic analyses of polycyclic aromatic hydrocarbon biodegradation in Sphingobium barthaii KK22 reveals divergent pathways in soil sphingomonads

R. Kanaly, Shinro Nishi, Y. Hatada, 2020 .

Screening and Phylogenetic Analysis of Deep-Sea Bacteria Capable of Metabolizing Lignin-Derived Aromatic Compounds

T. Maruyama, Taishi Tsubouchi, Y. Fujiwara, 2012 .

Mariprofundus micogutta sp. nov., a novel iron-oxidizing zetaproteobacterium isolated from a deep-sea hydrothermal field at the Bayonnaise knoll of the Izu-Ogasawara arc, and a description of Mariprofundales ord. nov. and Zetaproteobacteria classis nov.

Shinro Nishi, Y. Takaki, T. Nunoura, 2017, Archives of Microbiology.

Microbacterium saccharophilum sp. nov., isolated from a sucrose-refining factory.

Shinro Nishi, Y. Shimane, Y. Hatada, 2013, International journal of systematic and evolutionary microbiology.

Diazotroph community structure and the role of nitrogen fixation in the nitrogen cycle in the Chukchi Sea (western Arctic Ocean)

S. Nishino, N. Harada, T. Shiozaki, 2018 .

Active Bacterial Flora Surrounding Foraminifera (Xenophyophorea) Living on the Deep-Sea Floor

H. Takami, Sayaka Hori, Wataru Arai, 2013, Bioscience, biotechnology, and biochemistry.

Deep-sea Rhodococcus sp. BS-15, Lacking the Phytopathogenic fas Genes, Produces a Novel Glucotriose Lipid Biosurfactant

D. Kitamoto, T. Fukuoka, J. Horiuchi, 2014, Marine Biotechnology.

Complete genome sequence and expression profile of the commercial lytic enzyme producer Lysobacter enzymogenes M497-1

H. Ikeda, K. Shin‐ya, T. Itoh, 2017, DNA research : an international journal for rapid publication of reports on genes and genomes.

Unique substrate specificity of a thermostable glycosyl hydrolase from an uncultured Anaerolinea, derived from bacterial mat on a subsurface geothermal water stream

H. Takami, Shinro Nishi, Y. Shimane, 2012, Biotechnology Letters.

Draft Genome Sequence of the Dimorphic Prosthecate Bacterium Brevundimonas abyssalis TAR-001 T

T. Maruyama, Taishi Tsubouchi, Shinro Nishi, 2013 .

Draft Genome Sequence of Mariprofundus micogutta Strain ET2

Y. Takaki, T. Nunoura, K. Takai, 2018, Genome Announcements.

Electrical Retrieval of Living Microorganisms from Cryopreserved Marine Sponges Using a Potential-Controlled Electrode

Taishi Tsubouchi, Y. Fujiwara, Shinro Nishi, 2015, Marine Biotechnology.

Deep-sea Rhodococcus sp. BS-15, Lacking the Phytopathogenic fas Genes, Produces a Novel Glucotriose Lipid Biosurfactant

D. Kitamoto, T. Fukuoka, J. Horiuchi, 2014, Marine Biotechnology.

Y. Takaki, T. Nunoura, K. Takai, 2016, Archives of Microbiology.

Microbacterium saccharophilum sp. nov., isolated from a sucrose-refining factory.

Y. Shimane, Y. Hatada, Y. Ohta, 2013, International journal of systematic and evolutionary microbiology.