Hamidreza Chitsaz

发表

Cell Identity Codes: Understanding Cell Identity from Gene Expression Profiles using Deep Neural Networks

Farzad Abdolhosseini, Behrooz Azarkhalili, Abbas Maazallahi, 2018, Scientific Reports.

Geodesics for Mobile Robots: A geometric optimal control approach

Hamidreza Chitsaz, 2009 .

Principal Variety Analysis

Hamidreza Chitsaz, Reza Iraji, H. Chitsaz, 2017, CoRL.

ARYANA: Aligning Reads by Yet Another Approach

Hamidreza Chitsaz, Milad Gholami, Mehdi Sadeghi, 2014, BMC Bioinformatics.

GTED: Graph Traversal Edit Distance

Hamidreza Chitsaz, Süleyman Cenk Sahinalp, Ali Sharifi-Zarchi, 2018, RECOMB.

NuRA: Numerical Roadmap Algorithm pdf

Hamidreza Chitsaz, Reza Iraji, 2014, ArXiv.

biRNA: Fast RNA-RNA Binding Sites Prediction

Hamidreza Chitsaz, Rolf Backofen, Süleyman Cenk Sahinalp, 2009, WABI.

Efficient Synergistic Single-Cell Genome Assembly

Hamidreza Chitsaz, Karsten Zengler, Harish Nagarajan, 2014, bioRxiv.

On Time-optimal Trajectories for a Car-like Robot with One Trailer pdf

Hamidreza Chitsaz, 2013, SIAM Conf. on Control and its Applications.

Enhancing Extraction of Drug-Drug Interaction from Literature Using Neutral Candidates, Negation, and Clause Dependency

Hamidreza Chitsaz, Behrouz Bokharaeian, Alberto Diaz, 2016, PloS one.

Preface to data mining in biomedical informatics and healthcare

Paulo J. G. Lisboa, Jacob D. Furst, Hamidreza Chitsaz, 2013, ICDM 2013.

Proceedings of the 1st International Workshop on Robot Learning and Planning (RLP 2016) pdf

Nancy M. Amato, Gregory S. Chirikjian, Geoffrey A. Hollinger, 2016, ArXiv.

AUC Maximization with K-hyperplane pdf

Hamidreza Chitsaz, Indrakshi Ray, Majdi Khalid, 2017, ArXiv.

An Efficient Algorithm for Upper Bound on the Partition Function of Nucleic Acids

Gholamreza Haffari, Hamidreza Chitsaz, Elmirasadat Forouzmand, 2013, J. Comput. Biol..

Proximal Stochastic AUC Maximization

Hamidreza Chitsaz, Indrakshi Ray, Majdi Khalid, 2020, 2020 International Joint Conference on Neural Networks (IJCNN).

The Fifth Robotic Soccer World Championships

Hamidreza Chitsaz, Fuminori Yamasaki, Vahab Mirrokni, 2002 .

SNPPhenA: a corpus for extracting ranked associations of single-nucleotide polymorphisms and phenotypes from literature

Hamidreza Chitsaz, Alberto Díaz, Behrouz Bokharaeian, 2017, Journal of Biomedical Semantics.

A partition function algorithm for interacting nucleic acid strands

Hamidreza Chitsaz, Rolf Backofen, Süleyman Cenk Sahinalp, 2009, Bioinform..

SEQuel: improving the accuracy of genome assemblies

Hamidreza Chitsaz, Christina Boucher, Pavel A. Pevzner, 2012, Bioinform..

Graph Traversal Edit Distance and Extensions

Ali Sharifi-Zarchi, Hamidreza Chitsaz, Akash Shrestha, 2020, J. Comput. Biol..

HyDA-Vista: towards optimal guided selection of k-mer size for sequence assembly

Hamidreza Chitsaz, Christina Boucher, Seyed Basir Shariat Razavi, 2014, BMC Genomics.

The RNA Newton polytope and learnability of energy parameters

Hamidreza Chitsaz, Elmirasadat Forouzmand, H. Chitsaz, 2013, Bioinform..

PyGTED: Python Application for Computing Graph Traversal Edit Distance.

Ali Sharifi-Zarchi, Hamidreza Chitsaz, Akash Shrestha, 2020, Journal of computational biology : a journal of computational molecular cell biology.

Confidence-Weighted Bipartite Ranking

Hamidreza Chitsaz, Indrakshi Ray, Majdi Khalid, 2016, ADMA.

Prediction of RNA-RNA interaction structure by centroids in the Boltzmann ensemble

Hamidreza Chitsaz, H. Chitsaz, 2010, 1002.1736.

Exact Learning of RNA Energy Parameters from Structure

Hamidreza Chitsaz, Mohammad Aminisharifabad, 2014, RECOMB.

Exact Learning of RNA Energy Parameters from Structure

Hamidreza Chitsaz, Mohammad Aminisharifabad, H. Chitsaz, 2013, RECOMB.

De novo co-assembly of bacterial genomes from multiple single cells

Hamidreza Chitsaz, Narjes S. Movahedi, Elmirasadat Forouzmand, 2012, 2012 IEEE International Conference on Bioinformatics and Biomedicine.

Increased robustness of early embryogenesis through collective decision-making by key transcription factors

Hamidreza Chitsaz, Hossein Baharvand, Hamid Pezeshk, 2015, BMC Systems Biology.

Minimum Wheel-Rotation Paths for Differential-Drive Mobile Robots

Devin J. Balkcom, Hamidreza Chitsaz, Steven M. LaValle, 2009, Int. J. Robotics Res..

Inferring Molecular Pathology and micro-RNA Transcriptome from mRNA Profiles of Cancer Biopsies through Deep Multi-Task Learning pdf

Behrooz Azarkhalili, Hamidreza Chitsaz, Ali Saberi, 2018, ArXiv.

Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species

Inanç Birol, Dominique Lavenier, Hamidreza Chitsaz, 2013, GigaScience.

Distilled single-cell genome sequencing and de novo assembly for sparse microbial communities

Hamidreza Chitsaz, Sorin Draghici, Narjes S. Movahedi, 2013, Bioinform..

NUROA: A numerical roadmap algorithm

Hamidreza Chitsaz, Reza Iraji, Hamidreza Chitsaz, 2014, 53rd IEEE Conference on Decision and Control.

Scalable Nonlinear AUC Maximization Methods

Hamidreza Chitsaz, Indrakshi Ray, Majdi Khalid, 2018, ECML/PKDD.

Session Introduction

Hamidreza Chitsaz, Rolf Backofen, Süleyman Cenk Sahinalp, 2003, Pacific Symposium on Biocomputing.

BPPart: RNA-RNA Interaction Partition Function in the Absence of Entropy

Sanjay V. Rajopadhye, Hamidreza Chitsaz, Ali Ebrahimpour Boroojeny, 2021, WABI.

An Explicit Characterization of Minimum Wheel-Rotation Paths for Differential-Drives

Devin J. Balkcom, Hamidreza Chitsaz, Steven M. LaValle, 2006 .

Candidate phylum TM6 genome recovered from a hospital sink biofilm provides genomic insights into this uncultivated phylum

Hamidreza Chitsaz, Shibu Yooseph, Pavel A Pevzner, 2013, Proceedings of the National Academy of Sciences.

DNA methylation regulates discrimination of enhancers from promoters through a H3K4me1-H3K4me3 seesaw mechanism

Ali Sharifi-Zarchi, Hamidreza Chitsaz, Hossein Baharvand, 2017, BMC Genomics.

Single-cell genome and metatranscriptome sequencing reveal metabolic interactions of an alkane-degrading methanogenic community

Hamidreza Chitsaz, Karsten Zengler, Harish Nagarajan, 2013, The ISME Journal.