Gene W. Yeo

发表

Maximum Entropy Modeling of Short Sequence Motifs with Applications to RNA Splicing Signals

Christopher B. Burge, Gene W. Yeo, 2004, J. Comput. Biol..

RESCUE-ESE identifies candidate exonic splicing enhancers in vertebrate exons

Christopher B. Burge, William G. Fairbrother, Phillip A. Sharp, 2004, Nucleic Acids Res..

Maximum entropy modeling of short sequence motifs with applications to RNA splicing signals

Christopher B. Burge, Gene W. Yeo, C. Burge, 2003, RECOMB '03.

Analysis of Single Cells on a Pseudotime Scale along Postnatal Pancreatic Beta Cell Development

Chun Zeng, Wen Jin, Francesca Mulas, 2017, BCB.

Systems Biology of RNA Binding Proteins

Gene W. Yeo, 2014, Advances in Experimental Medicine and Biology.

Multiclass Classification of SRBCTs

Tomaso Poggio, Gene W. Yeo, 2001 .

Alternative Splicing Events Identified in Human Embryonic Stem Cells and Neural Progenitors

Fred H. Gage, Xiangdong Xu, Gene W. Yeo, 2007, PLoS Comput. Biol..

Discovery and Analysis of Evolutionarily Conserved Intronic Splicing Regulatory Elements

Gene W. Yeo, E. V. Nostrand, T. Liang, 2007, PLoS Genetics.

Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans

Gene W. Yeo, A. Pasquinelli, T. Liang, 2010, Nature Structural &Molecular Biology.

Inference of Splicing Regulatory Activities by Sequence Neighborhood Analysis

Gene W. Yeo, Michael B. Stadler, C. Burge, 2006, PLoS genetics.

Systematic Identification and Analysis of Exonic Splicing Silencers

Gene W. Yeo, Michael E. Rolish, C. Burge, 2004, Cell.

Expanded encyclopaedias of DNA elements in the human and mouse genomes

Michael J. Purcaro, Gene W. Yeo, M. Gerstein, 2020, Nature.

Allele-specific binding of RNA-binding proteins reveals functional genetic variants in the RNA

Gene W. Yeo, C. Burge, A. Urban, 2018, Nature Communications.

Determination of tag density required for digital transcriptome analysis: Application to an androgen-sensitive prostate cancer model

Gene W. Yeo, M. Rosenfeld, Michael T. Lovci, 2008, Proceedings of the National Academy of Sciences.

An RNA code for the FOX2 splicing regulator revealed by mapping RNA-protein interactions in stem cells

Gene W. Yeo, T. Liang, F. Gage, 2009, Nature Structural &Molecular Biology.

Robust transcriptome-wide discovery of RNA binding protein binding sites with enhanced CLIP (eCLIP)

Gene W. Yeo, M. Guttman, Eric L. Van Nostrand, 2016, Nature Methods.

Identification and analysis of alternative splicing events conserved in human and mouse.

Tomaso Poggio, Dirk Holste, Gene W Yeo, 2005, Proceedings of the National Academy of Sciences of the United States of America.

Base editing: advances and therapeutic opportunities

Gene W. Yeo, Alexis C. Komor, I. Slaymaker, 2020, Nature Reviews Drug Discovery.

Widespread RNA editing dysregulation in Autism Spectrum Disorders

Gene W. Yeo, D. Geschwind, X. Xiao, 2018, bioRxiv.

Widespread RNA editing dysregulation in brains from autistic individuals

Eric L Van Nostrand, Gene W Yeo, Xinshu Xiao, 2018, Nature Neuroscience.

RNA-seq analysis of gene expression and alternative splicing by double-random priming strategy.

Gene W. Yeo, Michael T. Lovci, Xiang-Dong Fu, 2011, Methods in molecular biology.

Retrotransposon long interspersed nucleotide element‐1 (LINE‐1) is activated during salamander limb regeneration

Wei Zhu, Akira Satoh, Gene W Yeo, 2012, Development, growth & differentiation.

Divergent Transcription from Active Promoters

Gene W. Yeo, Ryan A. Flynn, R. Young, 2008, Science.

The PIWI proteins SMEDWI-2 and SMEDWI-3 are required for stem cell function and piRNA expression in planarians.

Gene W Yeo, Gene W. Yeo, Dasaradhi Palakodeti, 2008, RNA.

Single-Cell Alternative Splicing Analysis with Expedition Reveals Splicing Dynamics during Neuron Differentiation.

Gene W. Yeo, O. Botvinnik, Michael T. Lovci, 2017, Molecular cell.

Dysregulation of RBFOX2 Is an Early Event in Cardiac Pathogenesis of Diabetes.

Gene W. Yeo, O. Botvinnik, X. Wehrens, 2016, Cell reports.

Rbfox proteins regulate alternative mRNA splicing through evolutionarily conserved RNA bridges

Gene W. Yeo, T. Liang, D. Black, 2013, Nature Structural &Molecular Biology.

A Large-Scale Binding and Functional Map of Human RNA Binding Proteins

Gene W. Yeo, C. Burge, E. Lécuyer, 2017, bioRxiv.

Musashi-2 Attenuates AHR Signaling to Expand Human Hematopoietic Stem Cells

Gary D Bader, Gene W. Yeo, B. Wilhelm, 2016, Nature.

LIN28 binds messenger RNAs at GGAGA motifs and regulates splicing factor abundance.

Gene W. Yeo, Q. Morris, H. Kazan, 2012, Molecular cell.

L1 retrotransposition in human neural progenitor cells

Gene W. Yeo, J. V. Moran, F. Gage, 2009, Nature.

Variation in alternative splicing across human tissues

Gene W. Yeo, G. Kreiman, C. Burge, 2004, Genome Biology.

RNA Processing

Gene W. Yeo, 2016, Advances in Experimental Medicine and Biology.

Variation in sequence and organization of splicing regulatory elements in vertebrate genes.

Gene W. Yeo, C. Burge, B. Venkatesh, 2004, Proceedings of the National Academy of Sciences of the United States of America.

Genome-wide analysis of PTB-RNA interactions reveals a strategy used by the general splicing repressor to modulate exon inclusion or skipping.

Gene W. Yeo, D. Black, Chao Zhang, 2009, Molecular cell.

Integrative genome‐wide analysis reveals cooperative regulation of alternative splicing by hnRNP proteins

Gene W. Yeo, S. Brenner, M. Ares, 2012, Cell reports.

Genome-wide analysis reveals SR protein cooperation and competition in regulated splicing.

Gene W. Yeo, M. Ares, Xiang-Dong Fu, 2013, Molecular cell.

Direct RNA sequencing enables m6A detection in endogenous transcript isoforms at base-specific resolution

Daniel A. Lorenz, Gene W. Yeo, S. Sathe, 2019, RNA.

Interaction Landscape of Inherited Polymorphisms with Somatic Events in Cancer.

Trey Ideker, Hannah Carter, Christopher M. DeBoever, 2017, Cancer discovery.

Perspectives on ENCODE

Xintao Wei, Christopher B. Burge, Jason Liu, 2020, Nature.

Misregulated RNA processing in amyotrophic lateral sclerosis

Gene W. Yeo, Clotilde Lagier-Tourenne, Kasey Hutt, 2012, Brain Research.

Evolutionarily Conserved Intronic Splicing Regulatory Elements in the Human Genome

Gene W. Yeo, E. V. Nostrand, 2008 .

Identification, improved modeling and integration of signals to predict constitutive and altering splicing

Gene W. Yeo, 2004 .

Transcriptome-wide profiles of circular RNA and RNA-binding protein interactions reveal effects on circular RNA biogenesis and cancer pathway expression

Gene W. Yeo, J. S. Pedersen, M. Nielsen, 2020, Genome medicine.

Alternative splicing in stem cell self-renewal and diferentiation.

Gene W. Yeo, David A. Nelles, 2010, Advances in experimental medicine and biology.

CHAPTER 7 ALTERNATIVE SPLICING IN STEM CELL SELF ‐ RENEWAL AND DIFFERENTIATION

Gene W. Yeo, David A. Nelles, 2010 .

CRISPR / Cas 9-mediated integration enables TAG-eCLIP of endogenously tagged RNA binding proteins

Gene W. Yeo, Gabriel A. Pratt, G. Pratt, 2016 .

Programmable RNA Tracking in Live Cells with CRISPR/Cas9

Jennifer A. Doudna, Gene W. Yeo, J. Doudna, 2016, Cell.

Sequence, Structure and Context Preferences of Human RNA Binding Proteins

Christopher B. Burge, Eric L Van Nostrand, Gene W. Yeo, 2017, bioRxiv.

RNA-binding proteins in neurodegeneration: Seq and you shall receive

Gene W. Yeo, Clotilde Lagier-Tourenne, C. Lagier-Tourenne, 2015, Trends in Neurosciences.

Long pre-mRNA depletion and RNA missplicing contribute to neuronal vulnerability from loss of TDP-43

Gene W. Yeo, Lily Shiue, Clotilde Lagier-Tourenne, 2011, Nature Neuroscience.

High-Throughput and Cost-Effective Characterization of Induced Pluripotent Stem Cells

Hiroko Matsui, Kelly A. Frazer, Gene W. Yeo, 2017, Stem cell reports.

Protein-RNA Networks Regulated by Normal and ALS-Associated Mutant HNRNPA2B1 in the Nervous System

Christopher B. Burge, Steven Finkbeiner, Gene W. Yeo, 2016, Neuron.

Advances and challenges in the detection of transcriptome‐wide protein–RNA interactions

Gene W. Yeo, Eric L. Van Nostrand, Emily C. Wheeler, 2017, Wiley interdisciplinary reviews. RNA.

A Model for Neural Development and Treatment of Rett Syndrome Using Human Induced Pluripotent Stem Cells

Fred H. Gage, Gene W. Yeo, Alysson R. Muotri, 2010, Cell.

How RNA-Binding Proteins Interact with RNA: Molecules and Mechanisms.

Gene W. Yeo, M. Corley, Margaret C Burns, 2020, Molecular cell.

Transcriptional Signature and Memory Retention of Human-Induced Pluripotent Stem Cells

Fred H. Gage, Gene W. Yeo, Alysson R. Muotri, 2009, PloS one.

Early specification of CD8+ T lymphocyte fates during adaptive immunity revealed by single-cell gene expression analyses

John T. Chang, Gene W. Yeo, Boyko Kakaradov, 2014, Nature Immunology.

Elimination of Toxic Microsatellite Repeat Expansion RNA by RNA-Targeting Cas9

Gene W. Yeo, Maurice S. Swanson, Stefan Aigner, 2017, Cell.

Nested oscillatory dynamics in cortical organoids model early human brain network development

Anna Devor, Richard Gao, Bradley Voytek, 2018, bioRxiv.

Patch-Seq Protocol to Analyze the Electrophysiology, Morphology and Transcriptome of Whole Single Neurons Derived From Human Pluripotent Stem Cells

Fred H. Gage, Gene W. Yeo, Jennifer A. Erwin, 2018, Front. Mol. Neurosci..

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins

Gene W. Yeo, B. Graveley, Xiang-Dong Fu, 2020, Genome Biology.

Genome‐wide approaches in the study of microRNA biology

Gene W. Yeo, Melissa L. Wilbert, 2011, Wiley interdisciplinary reviews. Systems biology and medicine.

Single-cell transcriptomes reveal b cell heterogeneity during postnatal maturation d A continuous trajectory of cells captures postnatal b cell transcriptome dynamics d Amino acid availability and ROS levels regulate postnatal b cell proliferation d The transcription factor Srf regulates proliferati

Gene W. Yeo, Andrea C. Carrano, Nathanael Miller, 2017 .

Regulation of Asymmetric Division and CD8+ T Lymphocyte Fate Specification by Protein Kinase Cζ and Protein Kinase Cλ/ι

John T. Chang, Gene W. Yeo, Katherine Elizabeth Oakley, 2015, The Journal of Immunology.

Protein Kinase C ζ Kinase C T Lymphocyte Fate Specification by Protein + Regulation of Asymmetric Division and CD 8

John T. Chang, Gene W. Yeo, K. Akimoto, 2015 .

Pairing beyond the Seed Supports MicroRNA Targeting Specificity.

Gene W Yeo, Gene W. Yeo, A. Pasquinelli, 2016, Molecular cell.

Unbiased identification of nanoparticle cell uptake mechanism via a genome-wide CRISPR/Cas9 knockout screen

Gene W. Yeo, E. V. Nostrand, Alexander A. Shishkin, 2020, bioRxiv.

Coordinate Nodal and BMP inhibition directs Baf60c-dependent cardiomyocyte commitment

Gene W. Yeo, Wenqing Cai, M. Mercola, 2013, Genes & development.

cardiomyocyte commitment Coordinate Nodal and BMP inhibition directs Baf 60 c-dependent Material Supplemental

Gene W. Yeo, Wenqing Cai, M. Mercola, 2013 .

Footprinting SHAPE-eCLIP Reveals Transcriptome-wide Hydrogen Bonds at RNA-Protein Interfaces.

Howard Y. Chang, Gene W. Yeo, Ryan A. Flynn, 2020, Molecular cell.

Overriding FUS autoregulation in mice triggers gain-of-toxic 1 dysfunctions in RNA metabolism and autophagy-lysosome axis 2 3

Debbie, Shuying, Gene W. Yeo, 2022 .

ALS-linked TDP-43 mutations produce aberrant RNA splicing and adult-onset motor neuron disease without aggregation or loss of nuclear TDP-43

Gene W. Yeo, C. Shaw, L. Tessarollo, 2013, Proceedings of the National Academy of Sciences.

Regulation of RNA editing by RNA-binding proteins in human cells

Gene W. Yeo, X. Xiao, B. Graveley, 2019, Communications Biology.

Differential LINE-1 regulation in pluripotent stem cells of humans and other great apes

Gene W. Yeo, M. Weitzman, F. Gage, 2013, Nature.

The Calcineurin Variant CnAβ1 Controls Mouse Embryonic Stem Cell Differentiation by Directing mTORC2 Membrane Localization and Activation.

Gene W. Yeo, B. Sundararaman, E. Lara-Pezzi, 2016, Cell chemical biology.

Nol12 is a multifunctional RNA binding protein at the nexus of RNA and DNA metabolism

Gene W. Yeo, Eric L. Van Nostrand, M. Oeffinger, 2017, Nucleic acids research.

iPSCORE: A Resource of 222 iPSC Lines Enabling Functional Characterization of Genetic Variation across a Variety of Cell Types.

Christopher M. DeBoever, William W. Greenwald, Bernhard M. Schuldt, 2017, Stem cell reports.

Emergence of an early SARS-CoV-2 epidemic in the United States

Gene W. Yeo, M. Suchard, K. Khan, 2021, Cell.

Glial cells maintain synapses by inhibiting an activity-dependent retrograde protease signal

Gene W. Yeo, B. Sundararaman, F. de Winter, 2019, PLoS genetics.

Multiple layers of molecular controls modulate self-renewal and neuronal lineage specification of embryonic stem cells.

Gene W. Yeo, F. Gage, A. Muotri, 2008, Human molecular genetics.

Zika Virus Is Transmitted in Neural Progenitor Cells via Cell-to-Cell Spread, and Infection Is Inhibited by the Autophagy Inducer Trehalose

Gene W. Yeo, J. Rich, D. Spector, 2020, Journal of Virology.

RNA-Targeting CRISPR/Cas13d System Eliminates Disease-Related Phenotypes in Pre-clinical Models of Huntington’s Disease

Gene W. Yeo, Maya L. Gosztyla, Ryan J. Marina, 2022, bioRxiv.

Aberrant NOVA1 function disrupts alternative splicing in early stages of amyotrophic lateral sclerosis

Gene W. Yeo, J. Winkler, K. Boldt, 2022, Acta Neuropathologica.

An in vivo genome-wide CRISPR screen identifies the RNA-binding protein Staufen2 as a key regulator of myeloid leukemia

Gene W. Yeo, E. V. Nostrand, A. Rao, 2020, Nature Cancer.

AMPK regulation of Raptor and TSC2 mediate metformin effects on transcriptional control of anabolism and inflammation

Gene W. Yeo, Eric L. Van Nostrand, R. Shaw, 2020, Genes & development.

Self-Transfecting Micellar RNA: Modulating Nanoparticle Cell Interactions via High Density Display of Small Molecule Ligands on Micelle Coronas.

Gene W. Yeo, M. Thompson, N. Gianneschi, 2017, Bioconjugate chemistry.

Conserved metabolite regulation of stress granule assembly via AdoMet

Gene W. Yeo, Anthony Q. Vu, Kyle Begovich, 2020, The Journal of cell biology.

Small-Molecule Modulatio n of TDP-43 Recruitment to Stress Granules Prevents Persistent TDP-43 Accumulation in ALS / FTD Graphical

Gene W. Yeo, Jeremy W. Linsley, S. Finkbeiner, 2019 .

Small-Molecule Modulation of TDP-43 Recruitment to Stress Granules Prevents Persistent TDP-43 Accumulation in ALS/FTD

Gene W. Yeo, A. Javaherian, Anthony Q. Vu, 2019, Neuron.

Modulation of RNA-dependent interactions in stress granules prevents persistent TDP-43 accumulation in ALS/FTD

Gene W. Yeo, M. Mercola, Sheng Ding, 2018, bioRxiv.

Aberrant NOVA1 function disrupts alternative splicing in early stages of amyotrophic lateral sclerosis

Gene W. Yeo, J. Winkler, K. Boldt, 2022, Acta Neuropathologica.

Handwashing and Detergent Treatment Greatly Reduce SARS-CoV-2 Viral Load on Halloween Candy Handled by COVID-19 Patients

Gene W. Yeo, J. Gilbert, F. Rohwer, 2020, mSystems.

Functional delineation of tissue-resident CD8+ T cell heterogeneity during infection and cancer

John T. Chang, Gene W. Yeo, Quynh P. Nguyen, 2020, bioRxiv.

A Novel Splice-Site Mutation in ALS2 Establishes the Diagnosis of Juvenile Amyotrophic Lateral Sclerosis in a Family with Early Onset Anarthria and Generalized Dystonias

Gene W. Yeo, E. Tai, C. Khor, 2014, PloS one.

Integrin Activation Controls Regulatory T Cell–Mediated Peripheral Tolerance

John T. Chang, Gene W. Yeo, Ye Zheng, 2018, The Journal of Immunology.

Prions induce an early Arc response and a subsequent reduction in mGluR5 in the hippocampus

Gene W. Yeo, C. Sigurdson, M. Geschwind, 2022, Neurobiology of Disease.

Th 17 Lymphocytes Induce Neuronal Cell Death in a Human iPSC-Based Model of Parkinson ’ s Disease Graphical

Gene W. Yeo, F. Gage, B. Winner, 2018 .

S-nitrosylated TDP-43 triggers aggregation, cell-to-cell spread, and neurotoxicity in hiPSCs and in vivo models of ALS/FTD

Gene W. Yeo, S. Lipton, J. Yates, 2021, Proceedings of the National Academy of Sciences.

The C. elegans neural editome reveals an ADAR target mRNA required for proper chemotaxis

Gene W. Yeo, B. Yee, H. Hundley, 2017, eLife.

Alternative Splicing of a Novel Inducible Exon Diversifies the CASK Guanylate Kinase Domain

Gene W. Yeo, P. Grabowski, P. An, 2012, Journal of nucleic acids.

Reversal of molecular pathology by RNA-targeting Cas9 in a myotonic dystrophy mouse model

Gene W. Yeo, M. Swanson, S. Blue, 2017, bioRxiv.

Title : Reversal of molecular pathology by RNA-targeting Cas 9 in a myotonic dystrophy mouse model

Gene W. Yeo, M. Swanson, S. Blue, 2017 .

Targeted degradation of sense and antisense C9orf72 RNA foci as therapy for ALS and frontotemporal degeneration

Gene W. Yeo, S. Vandenberg, Xiang-Dong Fu, 2013, Proceedings of the National Academy of Sciences.

Aging RNA granule dynamics in neurodegeneration

Gene W. Yeo, Tao Yu, Kevin Rhine, 2022, Frontiers in Molecular Biosciences.

A regulator of Dscam mutually exclusive splicing fidelity

Gene W. Yeo, Yiannis A. Savva, B. Graveley, 2007, Nature Structural &Molecular Biology.

Heterogeneity and clonal relationships of adaptive immune cells in ulcerative colitis revealed by single-cell analyses

John T. Chang, Gene W. Yeo, Siddharth Singh, 2020, Science Immunology.

A Gene Regulatory Network Cooperatively Controlled by Pdx1 and Sox9 Governs Lineage Allocation of Foregut Progenitor Cells.

Gene W. Yeo, M. Magnuson, Ruiyu Xie, 2015, Cell reports.

A Gene Regulatory Netwo rk Cooperatively Controlled by Pdx 1 and Sox 9 Governs Lineage Allocation of Foregut Progenitor Cells Graphical

Gene W. Yeo, M. Magnuson, Ruiyu Xie, 2022 .

Differential L 1 regulation in pluripotent stem cells of humans and apes

Gene W. Yeo, M. Weitzman, F. Gage, 2013 .

Applications of Cas9 as an RNA-programmed RNA-binding protein.

Gene W. Yeo, S. Aigner, David A. Nelles, 2015, BioEssays : news and reviews in molecular, cellular and developmental biology.

Disruption of RNA Metabolism in Neurological Diseases and Emerging Therapeutic Interventions

Gene W. Yeo, C. Lagier-Tourenne, Julia K Nussbacher, 2019, Neuron.

Applications of Cas 9 as an RNA-programmed RNA-binding protein

Gene W. Yeo, S. Aigner, David A. Nelles, 2015 .

Erratum: Plant-derived flavanol (-)epicatechin enhances angiogenesis and retention of spatial memory in mice (Journal of Neuroscience (2007) (5869-5878))

Gene W. Yeo, Melanie J. Lucero, F. Gage, 2007 .

Pathological missense mutations of neural cell adhesion molecule L1 affect homophilic and heterophilic binding activities

Gene W. Yeo, S. Kenwrick, T. Brümmendorf, 1999, The EMBO journal.

Immunoglobulin light chain (IgL) genes in zebrafish: Genomic configurations and inversional rearrangements between (VL–JL–CL) gene clusters

Gene W. Yeo, K. Howe, L. Steiner, 2008, Developmental and comparative immunology.

Immunoglobulin light chain (IgL) genes in zebrafish: Genomic configurations and inversional rearrangements between (V[subscript L]–J[subscript L–C[subscript L) gene clusters

Gene W. Yeo, K. Howe, L. Steiner, 2007 .

Characterization of an RNA binding protein interactome reveals a context-specific post-transcriptional landscape of MYC-amplified medulloblastoma

Gene W. Yeo, J. Moffat, J. Reimand, 2022, Nature Communications.

Corrigendum: Patch-Seq Protocol to Analyze the Electrophysiology, Morphology and Transcriptome of Whole Single Neurons Derived From Human Pluripotent Stem Cells

Gene W. Yeo, F. Gage, C. Bardy, 2019, Front. Mol. Neurosci..

Examination of the Cell Cycle Dependence of Cytosine and Adenine Base Editors

Gene W. Yeo, Alexis C. Komor, C. A. McHugh, 2022, Frontiers in genome editing.

Distinct and shared functions of ALS-associated proteins TDP-43, FUS and TAF15 revealed by multisystem analyses

Gene W. Yeo, C. Burge, T. Liang, 2016, Nature Communications.

Rbfox2 function in RNA metabolism is impaired in hypoplastic left heart syndrome patient hearts

Gene W. Yeo, S. Verma, Curtis A. Nutter, 2016, Scientific Reports.

Complex Oscillatory Waves Emerging from Cortical Organoids Model Early Human Brain Network Development.

Gene W. Yeo, A. Muotri, A. Devor, 2019, Cell stem cell.

Repeat RNA expansion disorders of the nervous system: post-transcriptional mechanisms and therapeutic strategies

Gene W. Yeo, Joshua L. Schwartz, Krysten L. Jones, 2020, Critical reviews in biochemistry and molecular biology.

iPSCORE: A Resource of 222 iPSC Lines Enabling Functional Characterization of Genetic Variation across a Variety of Cell Types

Christopher M. DeBoever, William W. Greenwald, Bernhard M. Schuldt, 2017, Stem cell reports.

Noncoding RNAs in the mammalian central nervous system.

Gene W. Yeo, Tomoko Kuwabara, F. Gage, 2006, Annual review of neuroscience.

Zmat3 Is a Key Splicing Regulator in the p53 Tumor Suppression Program.

Gene W. Yeo, S. Lowe, C. Curtis, 2020, Molecular cell.

Intracellular mRNA Regulation with Self-Assembled Locked Nucleic Acid Polymer Nanoparticles

Gene W. Yeo, A. M. Rush, N. Gianneschi, 2014, Journal of the American Chemical Society.

Divergent roles of ALS-linked proteins FUS/TLS and TDP-43 intersect in processing long pre-mRNAs

Stephanie C Huelga, Gene W Yeo, Gene W. Yeo, 2012, Nature Neuroscience.

Th17 Lymphocytes Induce Neuronal Cell Death in a Human iPSC-Based Model of Parkinson's Disease.

Gene W. Yeo, F. Gage, J. Winkler, 2018, Cell stem cell.

Short Poly(A) Tails are a Conserved Feature of Highly Expressed Genes

Gene W. Yeo, A. Pasquinelli, J. Coller, 2017, Nature Structural & Molecular Biology.

Early precursors and molecular determinants of tissue-resident memory CD8+ T lymphocytes revealed by single-cell RNA sequencing

John T. Chang, Gene W. Yeo, A. Goldrath, 2020, Science Immunology.

Molecular determinants and heterogeneity of tissue-resident memory CD8+ T lymphocytes revealed by single-cell RNA sequencing

John T. Chang, Gene W. Yeo, A. Goldrath, 2020, bioRxiv.

Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea.

Gene W. Yeo, Michael T. Lovci, B. Graveley, 2009, RNA.

Schmidtea mediterranea Deep sequencing identifies new and regulated microRNAs in

Gene W. Yeo, Michael T. Lovci, B. Graveley, 2009 .

RNA sequence analysis defines Dicer's role in mouse embryonic stem cells

Gene W Yeo, Gene W. Yeo, Phillip A Sharp, 2007, Proceedings of the National Academy of Sciences.

A Small RNA-Catalytic Argonaute Pathway Tunes Germline Transcript Levels to Ensure Embryonic Divisions

Gene W. Yeo, K. Oegema, A. Desai, 2016, Cell.

Loss of LUC7L2 and U1 snRNP subunits shifts energy metabolism from glycolysis to OXPHOS.

Gene W. Yeo, Bridget E. Begg, Alexis A. Jourdain, 2021, Molecular cell.

NEAT1 Scaffolds RNA Binding Proteins and the Microprocessor to Globally Enhance Pri-miRNA Processing

Gene W. Yeo, C. Shao, Xiang-Dong Fu, 2017, Nature Structural &Molecular Biology.

Genetic mutations in RNA-binding proteins and their roles in ALS

Gene W. Yeo, Fernando J. Martinez, Katannya Kapeli, 2017, Human Genetics.

Evaluation of Engineered CRISPR-Cas-Mediated Systems for Site-Specific RNA Editing.

Gene W. Yeo, Ryan J. Marina, B. Yee, 2020, Cell reports.

L1 retrotransposition in neurons is modulated by MeCP2

Fred H. Gage, Gene W. Yeo, Alysson R. Muotri, 2010, Nature.

Wnt-mediated activation of NeuroD1 and retro-elements during adult neurogenesis

Gene W. Yeo, F. Gage, A. Muotri, 2009, Nature Neuroscience.

Transcriptome-wide profiles of circular RNA and RNA-binding protein interactions reveal effects on circular RNA biogenesis and cancer pathway expression

Gene W. Yeo, J. S. Pedersen, M. Nielsen, 2020, Genome Medicine.

Pseudotemporal Ordering of Single Cells Reveals Metabolic Control of Postnatal β Cell Proliferation.

Francesca Mulas, Gene W Yeo, Nathanael Miller, 2017, Cell metabolism.

Sequence, Structure and Context Preferences of Human RNA Binding Proteins

Eric L Van Nostrand, Gene W Yeo, Gene W. Yeo, 2017, bioRxiv.

Blurred Boundaries: The RNA Binding Protein Lin28A Is Also an Epigenetic Regulator.

Gene W. Yeo, Frederick E. Tan, 2016, Molecular cell.

Nxf1 Natural Variant E610G Is a Semi-dominant Suppressor of IAP-Induced RNA Processing Defects

Gene W. Yeo, Kevin D. Ross, Kasey R. Hutt, 2015, PLoS genetics.

Early transcriptional and epigenetic regulation of CD 8 + T cell differentiation revealed by single-cell RNA sequencing

John T. Chang, Gene W Yeo, Gene W. Yeo, 2017 .

Heterogenous Populations of Tissue-Resident CD8+ T Cells Are Generated in Response to Infection and Malignancy.

John T. Chang, Gene W. Yeo, Quynh P. Nguyen, 2020, Immunity.

Early transcriptional and epigenetic regulation of CD8+ T cell differentiation revealed by single-cell RNA-seq

John T. Chang, Gene W Yeo, Gene W. Yeo, 2017, Nature Immunology.

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins

Gene W. Yeo, B. Graveley, Xiang-Dong Fu, 2019, Genome Biology.

A Transcriptome-wide Translational Program Defined by LIN28B Expression Level.

Gene W. Yeo, S. Sathe, Emily C. Wheeler, 2019, Molecular cell.

CRISPR/Cas9-mediated integration enables TAG-eCLIP of endogenously tagged RNA binding proteins.

Eric L Van Nostrand, Gene W Yeo, Gene W. Yeo, 2017, Methods.

The Clothes Make the mRNA: Past and Present Trends in mRNP Fashion.

Gene W. Yeo, M. Moore, G. Pratt, 2015, Annual review of biochemistry.

The dsRBP and inactive editor ADR-1 utilizes dsRNA binding to regulate A-to-I RNA editing across the C. elegans transcriptome.

Gene W. Yeo, Shawn Hoon, B. Sundararaman, 2014, Cell reports.

Identification of Novel Long Noncoding RNAs Underlying Vertebrate Cardiovascular Development

Gene W. Yeo, I. Sancho-Martinez, C. Benner, 2015, Circulation.

Evidence for premature aging due to oxidative stress in iPSCs from Cockayne syndrome.

Gene W Yeo, Gene W. Yeo, Alysson Renato Muotri, 2012, Human molecular genetics.

An RNA-targeting CRISPR–Cas13d system alleviates disease-related phenotypes in Huntington’s disease models

Gene W. Yeo, Maya L. Gosztyla, L. Thompson, 2022, Nature Neuroscience.

High-Resolution Profiling and Analysis of Viral and Host Small RNAs during Human Cytomegalovirus Infection

Gene W. Yeo, D. Spector, Justin D Arnold, 2011, Journal of Virology.

A Transcriptome-wide Tra nslational Program Defined by LIN 28 B Expression Level Graphical Abstract Highlights

Gene W. Yeo, S. Sathe, Emily C. Wheeler, 2018 .

LIN-28 co-transcriptionally binds primary let-7 to regulate miRNA maturation in C. elegans

Gene W. Yeo, A. Pasquinelli, K. Massirer, 2011, Nature Structural &Molecular Biology.

SONAR Discovers RNA-Binding Proteins from Analysis of Large-Scale Protein-Protein Interactomes.

Gene W. Yeo, M. Washburn, L. Florens, 2016, Molecular cell.

Glioblastomas derived from genetically modified pluripotent stem cells recapitulate pathobiology

Gene W. Yeo, V. Bafna, K. Frazer, 2019 .

Cancer avatars derived from genetically engineered pluripotent stem cells allow for longitudinal assessment of tumor development

Gene W. Yeo, V. Bafna, K. Frazer, 2019, bioRxiv.

Huntington's disease mice and human brain tissue exhibit increased G3BP1 granules and TDP43 mislocalization.

C. D. Fowler, Gene W. Yeo, R. Spitale, 2021, The Journal of clinical investigation.

Context-Dependent and Disease-Specific Diversity in Protein Interactions within Stress Granules

Gene W. Yeo, Raymond H. Mak, Sebastian J. Markmiller, 2018, Cell.

Functional Genomic Analysis of the let-7 Regulatory Network in Caenorhabditis elegans

Gene W. Yeo, A. Pasquinelli, D. G. Zisoulis, 2013, PLoS genetics.

Elimination of ToxicMicrosatellite Repeat Expansion RNA by RNA-Targeting Cas 9 Graphical

Gene W. Yeo, M. Swanson, S. Blue, 2017 .

Biallelic Mutations in the 3’ Exonuclease TOE1 Cause Pontocerebellar Hypoplasia and Uncover a Role in snRNA Processing

Gene W. Yeo, S. Gabriel, F. Baas, 2016, Nature Genetics.

Gene Expression Signatures of Sporadic ALS Motor Neuron Populations

Gene W. Yeo, Shawn Hoon, Anthony Q. Vu, 2016, bioRxiv.

Protein-RNA Networks Re gulated by Normal and ALS-Associated Mutant HNRNPA 2 B 1 in the Nervous System Highlights

Gene W. Yeo, M. Ares, C. Burge, 2016 .

ALS-causative mutations in FUS/TLS confer gain- and loss-of-function by altered association with SMN and U1-snRNP

Gene W. Yeo, E. Huang, K. Eggan, 2015, Nature Communications.

The EJC Factor eIF4AIII Modulates Synaptic Strength and Neuronal Protein Expression

Gene W. Yeo, G. Turrigiano, C. Burge, 2007, Cell.

Pseudouridine synthases modify human pre-mRNA co-transcriptionally and affect splicing

Gene W. Yeo, W. Gilbert, Nicole M. Martinez, 2020, bioRxiv.

Context-dependent functional compensation between Ythdf m6A reader proteins

Gene W. Yeo, J. Hanna, Schraga Schwartz, 2020, Genes & development.

Transcriptome-wide analysis of PGC-1α–binding RNAs identifies genes linked to glucagon metabolic action

Gene W. Yeo, P. Puigserver, K. Sharabi, 2020, Proceedings of the National Academy of Sciences.

Suppression of Endothelial AGO1 Promotes Adipose Tissue Browning and Improves Metabolic Dysfunction

Gene W. Yeo, Yusu Gu, K. Peterson, 2020, Circulation.

Genome-Wide Approaches to Dissect the Roles of RNA Binding Proteins in Translational Control: Implications for Neurological Diseases

Gene W. Yeo, Katannya Kapeli, 2012, Front. Neurosci..

An important class of intron retention events in human erythroblasts is regulated by cryptic exons proposed to function as splicing decoys

James B. Brown, Gene W. Yeo, Benjamin W. Booth, 2018, bioRxiv.

Experimental and Computational Considerations in the Study of RNA-Binding Protein-RNA Interactions.

Eric L Van Nostrand, Stephanie C Huelga, Gene W Yeo, 2016, Advances in experimental medicine and biology.

cell function and piRNA expression in planarians The PIWI proteins SMEDWI-2 and SMEDWI-3 are required for stem Material Supplemental

Gene W. Yeo, B. Graveley, Dasaradhi Palakodeti, 2022 .

Circadian oscillations of protein-coding and regulatory RNAs in a highly dynamic mammalian liver epigenome.

Satchidananda Panda, Robert J. Schmitz, Gene W. Yeo, 2012, Cell metabolism.

RNA sequence analysis defines Dicer's role in mouse embryonic stem cells (Proceedings of the National Academy of Science of the United States of America (November 13, 2007) 104, 46, (18097-18102) DOI: 10.1073/pnas.0709193104)

Gene W. Yeo, P. Sharp, J. M. Calabrese, 2007 .

Terminal Differentiation: REST

Gene W. Yeo, S. Aigner, 2009 .

A role for alternative splicing in circadian control of exocytosis and glucose homeostasis

Gene W. Yeo, P. MacDonald, J. Bass, 2020, Genes & development.

Characterization of an RNA binding protein interactome reveals a context-specific post-transcriptional landscape of MYC-amplified medulloblastoma

Gene W. Yeo, J. Moffat, J. Reimand, 2022, Nature Communications.

Systematic Discovery of RNA Binding Proteins that Regulate MicroRNA Levels.

Gene W. Yeo, Julia K. Nussbacher, 2018, Molecular cell.

Systematic Discovery of R NA Binding Proteins that Regulate MicroRNA Levels Graphical Abstract Highlights

Gene W. Yeo, Julia K. Nussbacher, 2018 .

Tethered Function Assays as Tools to Elucidate the Molecular Roles of RNA-Binding Proteins.

Gene W. Yeo, S. Aigner, T. Bos, 2016, Advances in experimental medicine and biology.

The Period protein homolog LIN-42 negatively regulates microRNA biogenesis in C. elegans.

Gene W. Yeo, A. Pasquinelli, Priscilla M. Van Wynsberghe, 2014, Developmental biology.

Disruption in A-to-I Editing Levels Affects C. elegans Development More Than a Complete Lack of Editing

Ayelet T. Lamm, Gene W. Yeo, H. Hundley, 2018, bioRxiv.

DDX5 promotes oncogene C3 and FABP1 expressions and drives intestinal inflammation and tumorigenesis

Gene W. Yeo, D. Sahoo, W. Huang, 2020, Life Science Alliance.

Pervasive Chromatin-RNA Binding Protein Interactions Enable RNA-Based Regulation of Transcription

Michael Q. Zhang, Gene W. Yeo, C. Burge, 2019, Cell.

The Ro60 autoantigen binds endogenous retroelements and regulates inflammatory gene expression

Gene W. Yeo, L. Criswell, T. Behrens, 2015, Science.

RNA binding protein CPEB1 remodels host and viral RNA landscapes

Gene W. Yeo, M. Ares, C. Gelboin-Burkhart, 2016, Nature Structural &Molecular Biology.

Human Cytomegalovirus Infection of Human Embryonic Stem Cell-Derived Primitive Neural Stem Cells Is Restricted at Several Steps but Leads to the Persistence of Viral DNA

Gene W. Yeo, D. Spector, T. Stark, 2014, Journal of Virology.

Emergence and rapid transmission of SARS-CoV-2 B.1.1.7 in the United States

Gene W. Yeo, M. Suchard, P. Febbo, 2021, Cell.

RBP-Maps enables robust generation of splicing regulatory maps

Eric L Van Nostrand, Gene W Yeo, Gene W. Yeo, 2018, RNA.

Variation in single-nucleotide sensitivity of eCLIP derived from reverse transcription conditions.

Gene W. Yeo, Eric L. Van Nostrand, G. Pratt, 2017, Methods.

Genomic analysis of the molecular neuropathology of tuberous sclerosis using a human stem cell model

Gene W. Yeo, Michel Theron, R. Jagasia, 2016, Genome Medicine.

Plant-Derived Flavanol (−)Epicatechin Enhances Angiogenesis and Retention of Spatial Memory in Mice

Gene W. Yeo, Melanie J. Lucero, F. Gage, 2007, The Journal of Neuroscience.

Emergence of an early SARS-CoV-2 epidemic in the United States

C. A. Hobbs, Gene W. Yeo, Alexandre Drouin, 2021, medRxiv.

Genomic epidemiology identifies emergence and rapid transmission of SARS-CoV-2 B.1.1.7 in the United States

Gene W. Yeo, P. Febbo, M. Laurent, 2021, medRxiv.

Nonclassical splicing mutations in the coding and noncoding regions of the ATM Gene: Maximum entropy estimates of splice junction strengths

Thilo Dörk, Gene W. Yeo, Mahnoush Babaei, 2004, Human mutation.

A CRISPR RNA-binding protein screen reveals regulators of RUNX1 isoform generation.

Gene W. Yeo, Xiang-Dong Fu, B. Tian, 2021, Blood advances.

Reactivation of Fetal Splicing Programs in Diabetic Hearts Is Mediated by Protein Kinase C Signaling*

Gene W. Yeo, Guey-Shin Wang, S. Verma, 2013, The Journal of Biological Chemistry.

Large-scale tethered function assays identify factors that regulate mRNA stability and translation

Jonathan C. Schmok, Gene W. Yeo, G. Pratt, 2020, Nature Structural & Molecular Biology.

Pooled CRISPR screens with imaging on microRaft arrays reveals stress granule-regulatory factors

Gene W. Yeo, N. Allbritton, Eric L. Van Nostrand, 2020, Nature Methods.

Pyruvate Kinase M Links Glucose Availability to Protein Synthesis

Gene W. Yeo, H. Najafabadi, S. Angers, 2019, bioRxiv.

A protein-RNA interaction atlas of the ribosome biogenesis factor AATF

Gene W. Yeo, C. Dieterich, R. Müller, 2019, Scientific Reports.

The RNA-binding protein AATF coordinates rRNA maturation

Gene W. Yeo, C. Dieterich, R. Müller, 2018, bioRxiv.

From Protein-RNA Predictions toward a Peptide-RNA Code.

Gene W. Yeo, Kristopher W. Brannan, 2016, Molecular cell.

Resources for the comprehensive discovery of functional RNA elements

Xintao Wei, Eric Lécuyer, Eurie L. Hong, 2015, bioRxiv.

Resource Resources for the Compre hensive Discovery of Functional RNA Elements Graphical

Eurie L. Hong, Gene W. Yeo, Jean M. Davidson, 2016 .

Resources for the comprehensive discovery of functional RNA elements

Eurie L. Hong, Gene W. Yeo, Jean M. Davidson, 2015, bioRxiv.

Gain-of-function cardiomyopathic mutations in RBM20 rewire splicing regulation and re-distribute ribonucleoprotein granules within processing bodies

Gene W. Yeo, B. Conklin, N. Salomonis, 2021, Nature Communications.

G4C2 Repeat RNA Initiates a POM121-Mediated Reduction in Specific Nucleoporins in C9orf72 ALS/FTD

Gene W. Yeo, J. Rothstein, C. Svendsen, 2020, Neuron.

The sustained expression of Cas9 targeting toxic RNAs reverses disease phenotypes in mouse models of myotonic dystrophy type 1

Gene W. Yeo, M. Swanson, S. Blue, 2020, Nature Biomedical Engineering.

Correction: Discovery and Analysis of Evolutionarily Conserved Intronic Splicing Regulatory Elements

Gene W. Yeo, E. V. Nostrand, T. Liang, 2007, PLoS genetics.

Splicing regulators: targets and drugs

Gene W. Yeo, Gene Wei-Ming Yeo, 2005, Genome Biology.

A Combinatorial Code for Splicing Silencing: UAGG and GGGG Motifs

Gene W. Yeo, Ping An, C. Burge, 2005, PLoS biology.

Target Discrimination in Nonsense-Mediated mRNA Decay Requires Upf1 ATPase Activity.

Gene W. Yeo, G. Pratt, J. Lykke-Andersen, 2015, Molecular cell.

Target Discrimination in Nonsense-Mediated mRNA Decay Requires Upf 1 ATPase Activity Graphical Abstract Highlights

Gene W. Yeo, G. Pratt, J. Lykke-Andersen, 2015 .

Dysregulation of RBFOX 2 I s anEarly Event in Cardiac Pathogenesis of Diabetes Graphical

Gene W. Yeo, O. Botvinnik, X. Wehrens, 2016 .

Photodegradation of parathion

Gene W. Yeo, C. Y. Mok, P. Marriott, 1987, Bulletin of environmental contamination and toxicology.

of Viral DNA Several Steps but Leads to the Persistence Primitive Neural Stem Cells Is Restricted at Human Embryonic Stem Cell-Derived Human Cytomegalovirus Infection of

Gene W. Yeo, D. Spector, T. Stark, 2014 .

The cohesin loader NIPBL interacts with pre-ribosomal RNA and treacle to regulate ribosomal RNA synthesis

Gene W. Yeo, Eric L. Van Nostrand, A. Lander, 2019, bioRxiv.

MicroRNA-101 Regulates Multiple Developmental Programs to Constrain Excitation in Adult Neural Networks

Gene W. Yeo, Laura A. Ewell, E. P. Frady, 2016, Neuron.

Active Protein Neddylation or Ubiquitylation Is Dispensable for Stress Granule Dynamics

Gene W. Yeo, E. Bennett, Sebastian J. Markmiller, 2018, bioRxiv.

RNA-targeting CRISPR systems from metagenomic discovery to transcriptomic engineering

Gene W. Yeo, A. Smargon, Yi Shi, 2020, Nature Cell Biology.

Context-dependent functional compensation between Ythdf m6A readers

Gene W. Yeo, J. Hanna, Noam Stern-Ginossar, 2020, bioRxiv.

The Thermus thermophilus DEAD-box protein Hera is a general RNA binding protein and plays a key role in tRNA metabolism

Gene W. Yeo, D. Klostermeier, B. Yee, 2020, RNA.

PPARδ repression in Huntington’s disease and its essential role in CNS translate into a potent agonist therapy

Gene W. Yeo, C. Ross, E. Masliah, 2016 .

Regulatory network of microRNAs in RAW 264.7 macrophage cells

Gene W. Yeo, C. Glass, S. Subramaniam, 2010, 2010 Annual International Conference of the IEEE Engineering in Medicine and Biology.

Reintroduction of the archaic variant of NOVA1 in cortical organoids alters neurodevelopment

Angela N. Brooks, Nathan K. Schaefer, Gene W. Yeo, 2021, Science.

Hippocampus‐dependent learning is associated with adult neurogenesis in MRL/MpJ mice

Gene W. Yeo, F. Gage, N. Toni, 2009, Hippocampus.

PPARδ repression in Huntington’s disease and its essential role in CNS translate into a potent agonist therapy

Gene W. Yeo, C. Ross, E. Masliah, 2015, Nature Medicine.

A distinct microRNA signature for definitive endoderm derived from human embryonic stem cells.

Gene W. Yeo, A. Pasquinelli, A. Hayek, 2010, Stem cells and development.

Context‐dependent and Disease‐specific Diversity in Stress Granules Formed from Pre‐existing Protein Interactions

Gene W. Yeo, Raymond Mak, E. Lécuyer, 2018 .

The RNA Helicase DDX6 Controls Cellular Plasticity by Modulating P-Body Homeostasis.

Gene W. Yeo, Katie J. Clowers, S. Gygi, 2019, Cell stem cell.

Transcriptome–pathology correlation identifies interplay between TDP-43 and the expression of its kinase CK1E in sporadic ALS

Gene W. Yeo, B. Winner, Z. Kohl, 2018, Acta Neuropathologica.

DDX5 targets tissue-specific RNAs to promote intestine tumorigenesis

Gene W. Yeo, W. Huang, Soumita Das, 2020, bioRxiv.

RNA-binding protein A1CF modulates plasma triglyceride levels through posttranscriptional regulation of stress-induced VLDL secretion

Gene W. Yeo, D. Rader, Eric L. Van Nostrand, 2018, bioRxiv.

Peptide Brush Polymers for Efficient Delivery of a Gene Editing Protein to Stem Cells

Gene W. Yeo, N. Gianneschi, David A. Nelles, 2019, Angewandte Chemie International Edition.

Efficient Delivery of a Gene Editing Protein to Stem Cells via Peptide Brush Polymers

Gene W. Yeo, N. Gianneschi, David A. Nelles, 2019 .

Programmable macromolecule-based RNA-targeting therapies to treat human neurological disorders

Gene W. Yeo, A. Smargon, K. H. Morelli, 2023, RNA.

Longitudinal assessment of tumor development using cancer avatars derived from genetically engineered pluripotent stem cells

Gene W. Yeo, V. Bafna, K. Frazer, 2020, Nature Communications.

Author Correction: A large-scale binding and functional map of human RNA-binding proteins

Gene W. Yeo, C. Burge, E. Lécuyer, 2021, Nature.

A Novel Splice-Site Mutation in ALS 2 Establishes the Diagnosis of Juvenile Amyotrophic Lateral Sclerosis in a Family with Early Onset Anarthria and Generalized

Gene W. Yeo, Mansoor, Khor, 2014 .

RNA adenosine deaminase ADAR2 modulates T helper 17 cell effector function

Gene W. Yeo, Xiang-Dong Fu, W. Huang, 2020 .

RNA Processing Disease and Genome-wide Probing

Gene W. Yeo, 2016 .

High-Throughput and Cost-Effective Characterization of Induced Pluripotent Stem Cells.

Gene W. Yeo, K. Frazer, Roy M. Williams, 2017, Stem cell reports.

Regulation of RNA editing by RNA-binding proteins in human cells

Gene W. Yeo, X. Xiao, B. Graveley, 2019, Communications Biology.

Tissue-selective restriction of RNA editing of CaV1.3 by splicing factor SRSF9

Gene W. Yeo, T. Arumugam, T. Soong, 2018, Nucleic acids research.

Enhanced CLIP Uncovers IMP Protein-RNA Targets in Human Pluripotent Stem Cells Important for Cell Adhesion and Survival.

Gene W. Yeo, C. Burge, T. Liang, 2016, Cell reports.

Proximity labeling reveals an extensive steady-state stress granule interactome and insights to neurodegeneration

Gene W. Yeo, E. Lécuyer, Raymond H. Mak, 2017, bioRxiv.

Regulation of RNA editing by RNA-binding proteins in human cells

Gene W. Yeo, X. Xiao, B. Graveley, 2019, Communications Biology.

A multi-scale map of cell structure fusing protein images and interactions

Edward L. Huttlin, Gene W. Yeo, Casper F. Winsnes, 2021, Nature.

Genomic analysis of the molecular neuropathology of tuberous sclerosis using a human stem cell model

Gene W. Yeo, Michel Theron, R. Jagasia, 2016, Genome Medicine.

Supporting Online Material for Divergent Transcription from Active Promoters

Gene W. Yeo, Ryan A. Flynn, R. Young, 2008 .

Comprehensive identification of miRNA target sites in live animals.

Gene W. Yeo, A. Pasquinelli, D. G. Zisoulis, 2011, Methods in molecular biology.

Overriding FUS autoregulation in mice triggers gain-of-toxic dysfunctions in RNA metabolism and autophagy-lysosome axis

Gene W. Yeo, C. Shaw, G. Tucker-Kellogg, 2019, eLife.

Longitudinal assessment of tumor development using cancer avatars derived from genetically engineered pluripotent stem cells

Gene W. Yeo, V. Bafna, K. Frazer, 2020, Nature Communications.

Resource Enhanced CLIP Uncovers IMP Protein-RNA Targets in Human Pluripotent Stem Cells Important for Cell Adhesion and Survival Graphical Abstract Highlights

Gene W. Yeo, C. Burge, T. Liang, 2016 .

Erratum to: Robust, Cost-Effective Profiling of RNA Binding Protein Targets with Single-end Enhanced Crosslinking and Immunoprecipitation (seCLIP).

Gene W. Yeo, Eric L. Van Nostrand, G. Pratt, 2017, Methods in molecular biology.

circHIPK3 nucleates IGF2BP2 and functions as a competing endogenous RNA

Gene W. Yeo, J. S. Pedersen, M. Nielsen, 2023, bioRxiv.

Session introduction

Gene W. Yeo, John Quackenbush, R. Davuluri, 2018, PSB.

Predicting the functional states of human iPSC-derived neurons with single-cell RNA-seq and electrophysiology

Gene W. Yeo, Baptiste N. Jaeger, Jennifer A. Erwin, 2016, Molecular Psychiatry.

Seryl-tRNA synthetase promotes translational readthrough by mRNA binding and involvement of the selenocysteine incorporation machinery

Gene W. Yeo, B. Yee, Qian Zhang, 2023, Nucleic acids research.

E.: “A Summary of

Ajay N. Jain, Gene W. Yeo, C. Y. Wang, 1968 .

Motoneuron expression profiling identifies an association between an axonal splice variant of HDGF-related protein 3 and peripheral myelination

Gene W. Yeo, F. Gage, J. Aimone, 2020, The Journal of Biological Chemistry.

Target Discrimination in Nonsense-Mediated mRNA Decay Requires Upf1 ATPase Activity.

Gene W. Yeo, G. Pratt, J. Lykke-Andersen, 2015, Molecular cell.

An RNA code for the FOX2 splicing regulator revealed by mapping RNA-protein interactions in stem cells

Gene W. Yeo, T. Liang, F. Gage, 2009, Nature Structural &Molecular Biology.

The dsRBP and inactive editor ADR-1 utilizes dsRNA binding to regulate A-to-I RNA editing across the C. elegans transcriptome.

Gene W. Yeo, Shawn Hoon, B. Sundararaman, 2014, Cell reports.

Pseudouridine synthases modify human pre-mRNA co-transcriptionally and affect splicing

Gene W. Yeo, Nicole M. Martinez, S. Sathe, 2020, bioRxiv.

Pairing beyond the Seed Supports MicroRNA Targeting Specificity.

Gene W. Yeo, A. Pasquinelli, Michael T. Lovci, 2016, Molecular cell.

Systematic Identification and Analysis of Exonic Splicing Silencers

Gene W. Yeo, Michael E. Rolish, Matthew Mawson, 2004, Cell.

A large-scale binding and functional map of human RNA-binding proteins

Gene W. Yeo, C. Burge, B. Graveley, 2020, Nature.

RNA-seq analysis of gene expression and alternative splicing by double-random priming strategy.

Gene W. Yeo, Michael T. Lovci, Xiang-Dong Fu, 2011, Methods in molecular biology.

A phage nucleus-associated RNA-binding protein is required for jumbo phage infection

Gene W. Yeo, J. Doudna, J. Pogliano, 2023, bioRxiv.

The C. elegans neural editome reveals an ADAR target mRNA required for proper chemotaxis

Gene W. Yeo, H. Hundley, Emily C. Wheeler, 2017, eLife.

Human Cytomegalovirus Infection of Human Embryonic Stem Cell-Derived Primitive Neural Stem Cells Is Restricted at Several Steps but Leads to the Persistence of Viral DNA

Gene W. Yeo, D. Spector, T. Stark, 2014, Journal of Virology.

RANK ligand converts the NCoR/HDAC3 co-repressor to a PGC1β- and RNA-dependent co-activator of osteoclast gene expression.

Gene W. Yeo, J. Stender, M. Rosenfeld, 2023, Molecules and Cells.

RNA-targeting CRISPR systems from metagenomic discovery to transcriptomic engineering

Gene W. Yeo, A. Smargon, Yi Shi, 2020, Nature Cell Biology.

Engineered U1 snRNAs to modulate alternatively spliced exons.

Gene W. Yeo, A. Smargon, Samuel T Hatch, 2022, Methods.

Musashi-2 Attenuates AHR Signaling to Expand Human Hematopoietic Stem Cells

Gary D Bader, Gene W. Yeo, B. Wilhelm, 2016, Nature.

Integrative genome-wide analysis reveals cooperative regulation of alternative splicing by hnRNP proteins.

Gene W. Yeo, S. Brenner, M. Ares, 2012, Cell reports.

Expanded palette of RNA base editors for comprehensive RBP-RNA interactome studies

Gene W. Yeo, S. Blue, Alexis C. Komor, 2023, bioRxiv.

Evidence for premature aging due to oxidative stress in iPSCs from Cockayne syndrome.

Gene W. Yeo, A. Muotri, C. Menck, 2012, Human molecular genetics.