J. F. Atkins

发表

Readthrough of dystrophin stop codon mutations induced by aminoglycosides

Uwe Fass, Kevin M Flanigan, C. Anderson, 2004, Annals of neurology.

Sequence specificity of aminoglycoside‐induced stop codon readthrough: Potential implications for treatment of Duchenne muscular dystrophy

K. Flanigan, R. Gesteland, B. Shirts, 2000, Annals of neurology.

Cell culture analysis of the regulatory frameshift event required for the expression of mammalian antizymes

S. Matsufuji, R. Gesteland, B. Shirts, 2001, Genes to cells : devoted to molecular & cellular mechanisms.

Structural probing and mutagenic analysis of the stem-loop required for Escherichia coli dnaX ribosomal frameshifting: programmed efficiency of 50%1

R. Gesteland, J. F. Atkins, Bente Larsen, 1997, Journal of Molecular Biology.

Recoding elements located adjacent to a subset of eukaryal selenocysteine‐specifying UGA codons

M. T. Howard, G. Aggarwal, C. Anderson, 2005, The EMBO journal.

A cryptic lysis gene near the start of the Qβ replicase gene in the +1 frame

J. F. Atkins, Y. Nishimura, H. Morisawa, 2004, Genes to cells : devoted to molecular & cellular mechanisms.

Programmed translational −1 frameshifting on hexanucleotide motifs and the wobble properties of tRNAs

R. Gesteland, O. Fayet, N. Wills, 2003, The EMBO journal.

One protein from two open reading frames: mechanism of a 50 nt translational bypass

R. Gesteland, A. Herr, J. F. Atkins, 2000, The EMBO journal.

Reading frame switch caused by base‐pair formation between the 3′ end of 16S rRNA and the mRNA during elongation of protein synthesis in Escherichia coli.

D. Dunn, R. Gesteland, A E Dahlberg, 1988, The EMBO journal.

Mutations which alter the elbow region of tRNA2Gly reduce T4 gene 60 translational bypassing efficiency

R. Gesteland, A. Herr, J. F. Atkins, 1999, The EMBO journal.

Translational bypassing without peptidyl‐tRNA anticodon scanning of coding gap mRNA

W. M. Huang, C. Nelson, M. O'Connor, 2008, The EMBO journal.

Evaluating ribosomal frameshifting in CCR5 mRNA decoding

P. Baranov, J. Kieft, A. Firth, 2022, Nature.

Programmed frameshifting in the synthesis of mammalian antizyme is +1 in mammals, predominantly +1 in fission yeast, but -2 in budding yeast.

Igor P. Ivanov, J. F. Atkins, S. Matsufuji, 1998, RNA.

Recoding: reprogrammed genetic decoding.

R. Weiss, J. F. Atkins, R. Gesteland, 1992, Science.

Slippery runs, shifty stops, backward steps, and forward hops: -2, -1, +1, +2, +5, and +6 ribosomal frameshifting.

R. Weiss, J. F. Atkins, R. Gesteland, 1987, Cold Spring Harbor symposia on quantitative biology.

Normal tRNAs promote ribosomal frameshifting

J. F. Atkins, R. Gesteland, B. Reid, 1979, Cell.

Discovery of a spermatogenesis stage-specific ornithine decarboxylase antizyme: antizyme 3.

Igor P. Ivanov, J. F. Atkins, R. Gesteland, 2000, Proceedings of the National Academy of Sciences of the United States of America.

A second mammalian antizyme: conservation of programmed ribosomal frameshifting.

Igor P. Ivanov, J. F. Atkins, R. Gesteland, 1998, Genomics.

The signal for a leaky UAG stop codon in several plant viruses includes the two downstream codons.

J. F. Atkins, R. Gesteland, J. Skuzeski, 1991, Journal of molecular biology.

Seven, eight and nine-membered anticodon loop mutants of tRNA(2Arg) which cause +1 frameshifting. Tolerance of DHU arm and other secondary mutations.

J. F. Atkins, R. Gesteland, T. Tuohy, 1992, Journal of molecular biology.

Recoding: dynamic reprogramming of translation.

J. F. Atkins, R. Gesteland, R F Gesteland, 1996, Annual review of biochemistry.

The RNA world : the nature of modern RNA suggests a prebiotic RNA world

R. Gesteland, J. F. Atkins, 1993 .

Pseudoknot‐dependent read‐through of retroviral gag termination codons: importance of sequences in the spacer and loop 2.

J. F. Atkins, R. Gesteland, N. Wills, 1994, The EMBO journal.

The role of EF-Tu and other translation components in determining translocation step size.

J. F. Atkins, R. Gesteland, T. Tuohy, 1990, Biochimica et biophysica acta.

A three-way junction and constituent stem-loops as the stimulator for programmed -1 frameshifting in bacterial insertion sequence IS911.

J. F. Atkins, R. Gesteland, O. Fayet, 1999, Journal of molecular biology.

Enhanced differential synthesis of proteins in a mammalian cell-free system by addition of polyamines.

J. F. Atkins, R. Gesteland, C. Anderson, 1975, The Journal of biological chemistry.

Analysis of the roles of tRNA structure, ribosomal protein L9, and the bacteriophage T4 gene 60 bypassing signals during ribosome slippage on mRNA.

J. F. Atkins, R. Gesteland, N. Wills, 2001, Journal of molecular biology.

rRNA-mRNA base pairing stimulates a programmed -1 ribosomal frameshift

J. F. Atkins, R. Gesteland, N. Wills, 1994, Journal of bacteriology.

Frameshifting in gene 10 of bacteriophage T7

J. F. Atkins, R. Gesteland, B. G. Condron, 1991, Journal of bacteriology.

An analysis of sequences stimulating frameshifting in the decoding of gene 10 of bacteriophage T7.

J. F. Atkins, R. Gesteland, B. G. Condron, 1991, Nucleic acids research.

E. coli ribosomes re-phase on retroviral frameshift signals at rates ranging from 2 to 50 percent.

R. Weiss, J. F. Atkins, R. Gesteland, 1989, The New biologist.

Characterization of ribosomal frameshift events by protein sequence analysis.

J. F. Atkins, R. Gesteland, T. Dayhuff, 1986, The Journal of biological chemistry.

Probing the structure of the Escherichia coli 10Sa RNA (tmRNA).

J. F. Atkins, J. McCutcheon, R. Gesteland, 1997, RNA.

Phylogenetic analysis of tmRNA genes within a bacterial subgroup reveals a specific structural signature.

E Westhof, E. Westhof, J. F. Atkins, 2001, Nucleic acids research.

A nickel complex cleaves uridine in folded RNA structures: application to E. coli tmRNA and related engineered molecules.

J. F. Atkins, R. Gesteland, B. Felden, 1998, Journal of molecular biology.

A profusion of upstream open reading frame mechanisms in polyamine-responsive translational regulation

John F. Atkins, Ivaylo P. Ivanov, J. F. Atkins, 2009, Nucleic acids research.

Nontriplet feature of genetic code in Euplotes ciliates is a result of neutral evolution

Stephen M. Heaphy, M. Gelfand, P. Baranov, 2023, Proceedings of the National Academy of Sciences of the United States of America.

Ribosomal frameshifting from -2 to +50 nucleotides.

R. Weiss, J. F. Atkins, R. Gesteland, 1990, Progress in nucleic acid research and molecular biology.

Thermodynamic calculations and statistical correlations for oligo-probes design.

A D Tsodikov, J. F. Atkins, R. Gesteland, 2003, Nucleic acids research.

Diverse bacterial genomes encode an operon of two genes, one of which is an unusual class-I release factor that potentially recognizes atypical mRNA signals other than normal stop codons

J. F. Atkins, R. Gesteland, P. Baranov, 2006, Biology Direct.

Coupling of open reading frames by translational bypassing.

A J Herr, J. F. Atkins, R. Gesteland, 2000, Annual review of biochemistry.

A rapid in vitro method for obtaining RNA accessibility patterns for complementary DNA probes: correlation with an intracellular pattern and known RNA structures.

J. F. Atkins, R. Gesteland, O. Matveeva, 1997, Nucleic acids research.

Evidence that a downstream pseudoknot is required for translational read-through of the Moloney murine leukemia virus gag stop codon.

J. F. Atkins, R. Gesteland, N. Wills, 1991, Proceedings of the National Academy of Sciences of the United States of America.