Johannes Ylinen

The Glanville fritillary genome retains an ancient karyotype and reveals selective chromosomal fusions in Lepidoptera

Liisa Holm, Esko Ukkonen, Panu Somervuo, 2014, Nature Communications.

Normalized N50 assembly metric using gap-restricted co-linear chaining

Veli Mäkinen, Leena Salmela, Johannes Ylinen, 2022 .

Fast scaffolding with small independent mixed integer programs

Esko Ukkonen, Veli Mäkinen, Niko Välimäki, 2011, Bioinform..