J M Thornton

发表

The Greek key motif: extraction, classification and analysis.

E G Hutchinson, J M Thornton, J. Thornton, 1993, Protein engineering.

1H NMR structure of an antifungal γ‐thionin protein SIα1: Similarity to scorpion toxins

J M Thornton, C Bloch, S U Patel, 1998, Proteins.

Modelling antibody combining sites: a review.

J M Thornton, J. Thornton, 2007, Ciba Foundation symposium.

An atlas of protein topology cartoons available on the World-Wide Web.

J M Thornton, D R Westhead, D C Hatton, 1998, Trends in biochemical sciences.

New tools and resources for analysing protein structures and their interactions.

N M Luscombe, J M Thornton, D R Westhead, 1998, Acta crystallographica. Section D, Biological crystallography.

Sequences annotated by structure: a tool to facilitate the use of structural information in sequence analysis.

J M Thornton, R A Laskowski, D Milburn, 1998, Protein engineering.

Classifying a protein in the CATH database of domain structures.

D T Jones, J M Thornton, C A Orengo, 1998, Acta crystallographica. Section D, Biological crystallography.

Protein fold recognition by sequence threading: tools and assessment techniques

D T Jones, J M Thornton, R T Miller, 1996, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

PDBsum: a Web-based database of summaries and analyses of all PDB structures.

M. L. Jones, E G Hutchinson, J M Thornton, 1997, Trends in biochemical sciences.

LIGPLOT: a program to generate schematic diagrams of protein-ligand interactions.

J M Thornton, R A Laskowski, A C Wallace, 1995, Protein engineering.

Derivation of 3D coordinate templates for searching structural databases: Application to ser‐His‐Asp catalytic triads in the serine proteinases and lipases

J M Thornton, R A Laskowski, A C Wallace, 1996, Protein science : a publication of the Protein Society.

Domain assignment for protein structures using a consensus approach: Characterization and analysis

J M Thornton, M B Swindells, S Jones, 1998, Protein science : a publication of the Protein Society.

Analysis of domain structural class using an automated class assignment protocol.

J M Thornton, C A Orengo, A D Michie, 1996, Journal of molecular biology.

A model recognition approach to the prediction of all-helical membrane protein structure and topology.

W R Taylor, D T Jones, J M Thornton, 1994, Biochemistry.

HERA—A program to draw schematic diagrams of protein secondary structures

E G Hutchinson, J M Thornton, J. Thornton, 1990, Proteins.

Conservation helps to identify biologically relevant crystal contacts.

J M Thornton, W S Valdar, J. Thornton, 2001, Journal of molecular biology.

An algorithm for automatically generating protein topology cartoons.

T. P. Flores, J M Thornton, T P Flores, 1994, Protein engineering.

Structural and sequence patterns in the loops of beta alpha beta units.

J M Thornton, J. Thornton, M. S. Edwards, 1987, Protein engineering.

From Genome to Function

J M Thornton, J. Thornton, 2001, Science.

Amino and carboxy-terminal regions in globular proteins.

J M Thornton, B. L. Sibanda, J. Thornton, 1983, Journal of molecular biology.

Recognition of super-secondary structure in proteins.

W R Taylor, J M Thornton, J. Thornton, 1984, Journal of molecular biology.

An extension of secondary structure prediction towards the production of tertiary structure

W R Taylor, J M Thornton, J. Thornton, 1991, FEBS Letters.

Towards an understanding of the arginine-aspartate interaction.

J M Thornton, J. Thornton, Juswinder Singh, 1992, Journal of molecular biology.

Protein side-chain conformation: a systematic variation of chi 1 mean values with resolution - a consequence of multiple rotameric states?

J M Thornton, M W MacArthur, 1999, Acta crystallographica. Section D, Biological crystallography.

Distributions of water around amino acid residues in proteins.

J M Thornton, J. Thornton, N. Thanki, 1988, Journal of molecular biology.

Long loops in proteins.

J M Thornton, J. Thornton, K. Toda, 1995, Protein engineering.

On the conformation of proteins: the handedness of the beta-strand-alpha-helix-beta-strand unit.

M J Sternberg, J M Thornton, M. Sternberg, 1976, Journal of molecular biology.

Conformational energy calculations for dinucleotide molecules. A study of the component mononucleotide adenosine 3'-monophosphate.

J M Thornton, J. Thornton, P. Bayley, 1975, The Biochemical journal.

J M Thornton, C A Orengo, M B Swindells, 1995, Protein science : a publication of the Protein Society.

Protein-DNA interactions: A structural analysis.

H M Berman, J M Thornton, S. Jones, 1999, Journal of molecular biology.

Prediction of protein structure from amino acid sequence.

M J Sternberg, J M Thornton, 1978, Biochemical Society transactions.

Prediction of protein structure from amino acid sequence.

M J Sternberg, J M Thornton, 1978, Nature.

Amino acid architecture and the distribution of polar atoms on the surfaces of proteins

J M Thornton, J. Thornton, H. Shanahan, 2005, Biopolymers.

Three-dimensional structure analysis of PROSITE patterns.

J M Thornton, J. Thornton, A. Kasuya, 1999, Journal of molecular biology.

DOMPLOT: a program to generate schematic diagrams of the structural domain organization within proteins, annotated by ligand contacts.

J M Thornton, C A Orengo, C. Orengo, 1999, Protein engineering.

NMR and crystallography--complementary approaches to structure determination.

J M Thornton, M W MacArthur, P C Driscoll, 1994, Trends in biotechnology.

SIRIUS. An automated method for the analysis of the preferred packing arrangements between protein groups.

J M Thornton, J. Thornton, Juswinder Singh, 1990, Journal of molecular biology.

Non‐randomness in side‐chain packing: the distribution of interplanar angles

J M Thornton, R A Laskowski, J. Thornton, 1997, Proteins.

Conformation of beta hairpins in protein structures: classification and diversity in homologous structures.

J M Thornton, B. L. Sibanda, J. Thornton, 1991, Methods in enzymology.

Small binding proteins selected from a combinatorial repertoire of knottins displayed on phage.

J M Thornton, J. Thornton, G. P. Smith, 1998, Journal of molecular biology.

Influence of secondary structure on the hydration of serine, threonine and tyrosine residues in proteins.

J M Thornton, J. Thornton, N. Thanki, 1990, Protein engineering.

Analysis and prediction of carbohydrate binding sites.

J M Thornton, C Taroni, S. Jones, 2000, Protein engineering.

Protein structure prediction.

J M Thornton, D R Westhead, J. Thornton, 1998, Current opinion in biotechnology.

Multiple solution conformations of the integrin-binding cyclic pentapeptide cyclo(-Ser-D-Leu-Asp-Val-Pro-). Analysis of the (phi, psi) space available to cyclic pentapeptides.

J M Thornton, P J Sadler, J. Thornton, 1996, European journal of biochemistry.

Molecular recognition. Conformational analysis of limited proteolytic sites and serine proteinase protein inhibitors.

J M Thornton, J. Thornton, S. Hubbard, 1991, Journal of molecular biology.

The distribution of charged groups in proteins

D J Barlow, J M Thornton, J. Thornton, 1986, Biopolymers.

Analysis of main chain torsion angles in proteins: prediction of NMR coupling constants for native and random coil conformations.

J M Thornton, C M Dobson, J. Thornton, 1996, Journal of molecular biology.

Using the CATH domain database to assign structures and functions to the genome sequences.

J M Thornton, M B Swindells, A A Salamov, 2000, Biochemical Society transactions.

A topological model for hepatitis B surface antigen.

C R Howard, J M Thornton, J. Thornton, 1992, Intervirology.

On the molecular discrimination between adenine and guanine by proteins.

J M Thornton, R A Laskowski, I Nobeli, 2001, Nucleic acids research.

On the conformation of proteins: hydrophobic ordering of strands in beta-pleated sheets.

M J Sternberg, J M Thornton, M. Sternberg, 1977, Journal of molecular biology.

Validation of protein models derived from experiment.

J M Thornton, R A Laskowski, J. Thornton, 1998, Current opinion in structural biology.

Rebuilding flavodoxin from C alpha coordinates: a test study.

J M Thornton, J. Thornton, L. Reid, 1989, Proteins.

Peptide–protein interactions: an overview

J M Thornton, J. Thornton, M. Zvelebil, 1993, Quarterly Reviews of Biophysics.

Main-chain bond lengths and bond angles in protein structures.

D S Moss, J M Thornton, R A Laskowski, 1993, Journal of molecular biology.

On the conformation of proteins: towards the prediction of strand arrangements in beta-pleated sheets.

M J Sternberg, J M Thornton, M. Sternberg, 1977, Journal of molecular biology.

Prediction of the location and type of β‐turns in proteins using neural networks

D Gorse, J M Thornton, J. Thornton, 1999, Protein science : a publication of the Protein Society.

Assessment of conformational parameters as predictors of limited proteolytic sites in native protein structures.

J M Thornton, R J Beynon, J. Thornton, 1998, Protein engineering.

On the conformation of proteins: the handedness of the connection between parallel beta-strands.

M J Sternberg, J M Thornton, M. Sternberg, 1977, Journal of molecular biology.

Location of ‘continuous’ antigenic determinants in the protruding regions of proteins.

W R Taylor, D J Barlow, J M Thornton, 1986, The EMBO journal.

Modelling protein unfolding: hen egg-white lysozyme.

J M Thornton, J. Thornton, J. Goodfellow, 1997, Protein engineering.

Modeling studies of the change in conformation required for cleavage of limited proteolytic sites

J M Thornton, F Eisenmenger, J. Thornton, 1994, Protein science : a publication of the Protein Society.

Small-molecule metabolism: an enzyme mosaic.

J M Thornton, C Chothia, C. Chothia, 2001, Trends in biotechnology.

An ellipsoidal approximation of protein shape

William R. Taylor, J M Thornton, J. Thornton, 1983 .

Pi-pi interactions: the geometry and energetics of phenylalanine-phenylalanine interactions in proteins.

J M Thornton, J. Thornton, C. Hunter, 1991, Journal of molecular biology.

Successful protein fold recognition by optimal sequence threading validated by rigorous blind testing

J M Thornton, David C. Jones, J. Thornton, 1995, Proteins.

Structure prediction and modelling.

J M Thornton, M B Swindells, M. Swindells, 1991, Current opinion in biotechnology.

X-SITE: use of empirically derived atomic packing preferences to identify favourable interaction regions in the binding sites of proteins.

J M Thornton, R A Laskowski, J. Thornton, 1996, Journal of molecular biology.

A novel method for the modelling of peptide ligands to their receptors.

J M Thornton, J Saldanha, J. Thornton, 1991, Protein engineering.

Amino acid sequence templates derived from recurrent turn motifs in proteins: critical evaluation of their predictive power.

M J Rooman, S J Wodak, J M Thornton, 1989, Protein engineering.

Protein-protein interactions: a review of protein dimer structures.

J M Thornton, S. Jones, J. Thornton, 1995, Progress in biophysics and molecular biology.