E. de la Calle‐Mustienes

发表

Amphioxus functional genomics and the origins of vertebrate gene regulation

Piotr J. Balwierz, M. Weirauch, P. Holland, 2018, Nature.

Genome-Wide Profiling of p63 DNA–Binding Sites Identifies an Element that Regulates Gene Expression during Limb Development in the 7q21 SHFM1 Locus

Bas E. Dutilh, Alexander Hoischen, Martijn A. Huynen, 2010, PLoS genetics.

The emergence of the brain non-CpG methylation system in vertebrates

C. W. Ragsdale, B. Venkatesh, R. Lister, 2021, Nature Ecology & Evolution.

The emergence of the brain non-CpG methylation system in vertebrates

C. W. Ragsdale, B. Venkatesh, R. Lister, 2021, Nature Ecology & Evolution.

A functional survey of the enhancer activity of conserved non-coding sequences from vertebrate Iroquois cluster gene deserts.

J. Tena, M. Manzanares, J. Gómez-Skarmeta, 2005, Genome research.

The little skate genome and the evolutionary emergence of wing-like fin appendages

A. Visel, J. Dekker, D. Rokhsar, 2022, bioRxiv.

Xiro, a Xenopus homolog of the Drosophila Iroquois complex genes, controls development at the neural plate

J. Modolell, J. Gómez-Skarmeta, R. Mayor, 1998, The EMBO journal.

Xenopus Xlmo4 is a GATA cofactor during ventral mesoderm formation and regulates Ldb1 availability at the dorsal mesoderm and the neural plate.

B. Andersen, J. Modolell, E. De la Calle-Mustienes, 2003, Developmental biology.

The Wnt-activated Xiro1 gene encodes a repressor that is essential for neural development and downregulates Bmp4.

J. Modolell, E. De la Calle-Mustienes, J. Gómez-Skarmeta, 2001, Development.

CTCF knockout in zebrafish induces alterations in regulatory landscapes and developmental gene expression

J. Tena, Martin Franke, J. Gómez-Skarmeta, 2020, Nature Communications.

Evolutionary comparison reveals that diverging CTCF sites are signatures of ancestral topological associating domains borders

Paola Bovolenta, Ignacio Maeso, José Luis Gómez-Skarmeta, 2015, Proceedings of the National Academy of Sciences.

Dynamics of enhancer chromatin signatures mark the transition from pluripotency to cell specification during embryogenesis

S. V. van Heeringen, G. Veenstra, J. Tena, 2012, Genome research.

Extensive conservation of ancient microsynteny across metazoans due to cis-regulatory constraints

Hunter B. Fraser, H. Fraser, J. Tena, 2012, Genome research.

The developmental epigenomics toolbox: ChIP-seq and MethylCap-seq profiling of early zebrafish embryos.

J. Tena, O. Bogdanović, J. Gómez-Skarmeta, 2013, Methods.

Conserved cross‐interactions in Drosophila and Xenopus between Ras/MAPK signaling and the dual‐specificity phosphatase MKP3

J. Gómez-Skarmeta, M. Ruiz-Gómez, C. Molnar, 2005, Developmental dynamics : an official publication of the American Association of Anatomists.

Deep conservation of wrist and digit enhancers in fish

Andrew R. Gehrke, J. Postlethwait, N. Shubin, 2014, Proceedings of the National Academy of Sciences.

A conserved Shh cis-regulatory module highlights a common developmental origin of unpaired and paired fins

N. Shubin, I. Schneider, J. Gómez-Skarmeta, 2018, Nature Genetics.

A single three-dimensional chromatin compartment in amphioxus indicates a stepwise evolution of vertebrate Hox bimodal regulation

P. Holland, J. Tena, D. Devos, 2016, Nature Genetics.

An evolutionarily conserved three-dimensional structure in the vertebrate Irx clusters facilitates enhancer sharing and coregulation.

J. Tena, W. de Laat, E. Splinter, 2011, Nature communications.

Characterization of New Otic Enhancers of the Pou3f4 Gene Reveal Distinct Signaling Pathway Regulation and Spatio-Temporal Patterns

J. Gómez-Skarmeta, S. Naranjo, A. Robert-Moreno, 2010, PloS one.

Multiple enhancers located in a 1-Mb region upstream of POU3F4 promote expression during inner ear development and may be required for hearing

H. Kremer, J. Economides, J. Gómez-Skarmeta, 2010, Human Genetics.

Zebrafish enhancer detection (ZED) vector: A new tool to facilitate transgenesis and the functional analysis of cis‐regulatory regions in zebrafish

B. Lenhard, A. Akalin, J. Tena, 2009, Developmental dynamics : an official publication of the American Association of Anatomists.

Odd-skipped genes encode repressors that control kidney development.

J. Tena, F. Casares, J. Gómez-Skarmeta, 2007, Developmental biology.

Depletion of Foxk transcription factors causes genome-wide transcriptional misregulation and developmental arrest in zebrafish embryos

R. Lister, O. Bogdanović, E. De la Calle-Mustienes, 2020, microPublication biology.

The genome sequencing of an albino Western lowland gorilla reveals inbreeding in the wild

Arcadi Navarro, Jaume Bertranpetit, Can Alkan, 2013, BMC Genomics.

A Polymorphic Enhancer near GREM1 Influences Bowel Cancer Risk through Differential CDX2 and TCF7L2 Binding

H. Stunnenberg, N. Hubner, I. Tomlinson, 2014, Cell reports.

Amphioxus functional genomics and the origins of vertebrate gene regulation

M. Weirauch, P. Holland, J. Garcia-Fernández, 2018, Nature.

The little skate genome and the evolutionary emergence of wing-like fins

A. Visel, J. Dekker, D. Rokhsar, 2023, Nature.

A conserved Shh cis-regulatory module highlights a common developmental origin of unpaired and paired fins

N. Shubin, I. Schneider, J. Gómez-Skarmeta, 2018, Nature Genetics.

The little skate genome and the evolutionary emergence of wing-like fins

A. Visel, J. Dekker, D. Rokhsar, 2023, Nature.