Yichen Si

Microscopic examination of spatial transcriptome using Seq-Scope

H. Kang, G. Jun, Myungjin Kim, 2021, Cell.

Type I interferon autoantibodies are associated with systemic immune alterations in patients with COVID-19

Mark S. Anderson, Chun Jimmie Ye, Yun S. Song, 2021, Science Translational Medicine.

Longitudinal single-cell epitope and RNA-sequencing reveals the immunological impact of type 1 interferon autoantibodies in critical COVID-19

Mark S. Anderson, Chun Jimmie Ye, Yun S. Song, 2021, bioRxiv.

Inferring CpG methylation signatures accumulated along human history from genetic variation catalogs

S. Zöllner, Yichen Si, 2023, bioRxiv.

Reference-free multiplexed single-cell sequencing identifies genetic modifiers of the human immune response

Chun Jimmie Ye, Yun S. Song, H. Kang, 2023, bioRxiv.

Why are rare variants hard to impute? Coalescent models reveal theoretical limits in existing algorithms

Sebastian Zöllner, Yichen Si, Brett Vanderwerff, 2020, bioRxiv.

Inferring CpG methylation signatures accumulated along human history from genetic variation catalogs

S. Zöllner, Yichen Si, 2023, bioRxiv.

FICTURE: Scalable segmentation-free analysis of submicron resolution spatial transcriptomics

Miguel Quirós, Jun Hee Lee, Yichen Si, 2023, bioRxiv.