Marco Varrone

CellCharter: a scalable framework to chart and compare cell niches across multiple samples and spatial -omics technologies

G. Ciriello, D. Tavernari, A. Santamaria-Martínez, 2023, bioRxiv.

Exploring chromatin conformation and gene co-expression through graph embedding.

S. Ceri, G. Ciriello, L. Nanni, 2020, Bioinformatics.

CXCL9:SPP1 macrophage polarity identifies a network of cellular programs that control human cancers

Allon M. Klein, N. Hacohen, G. Getz, 2023, Science.

CellCharter reveals spatial cell niches associated with tissue remodeling and cell plasticity.

G. Ciriello, D. Tavernari, A. Santamaria-Martínez, 2023, Nature genetics.

Patient-derived lymphomoids preserve the tumor architecture and allow to assess response to therapies in lymphoma

E. Oricchio, A. Santamaria-Martínez, Marco Varrone, 2024, bioRxiv.