Jüri Reimand

发表

GraphWeb: mining heterogeneous biological networks for gene modules with functional significance

Hedi Peterson, Jaak Vilo, Jüri Reimand, 2008, Nucleic Acids Res..

Functional analysis of gene lists, networks and regulatory systems

Jüri Reimand, J. Reimand, 2010 .

g:Profiler—a web server for functional interpretation of gene lists (2016 update)

Hedi Peterson, Jaak Vilo, Jüri Reimand, 2016, Nucleic Acids Res..

VisHiC—hierarchical functional enrichment analysis of microarray data

Hedi Peterson, Meelis Kull, Jaak Vilo, 2009, Nucleic Acids Res..

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes

Jun Yu, Chen Hong, Ken Chen, 2020, Nature.

ActiveDriverDB: human disease mutations and genome variation in post-translational modification sites of proteins

B. F. Francis Ouellette, Jüri Reimand, Michal Krassowski, 2017, bioRxiv.

KEGGanim: pathway animations for high-throughput data

Hedi Peterson, Jürgen Jänes, Raivo Kolde, 2008, Bioinform..

g:Profiler—a web server for functional interpretation of gene lists (2011 update)

Jaak Vilo, Jüri Reimand, Tambet Arak, 2011, Nucleic Acids Res..

g:Profiler—a web-based toolset for functional profiling of gene lists from large-scale experiments

Hedi Peterson, Meelis Kull, Jaak Vilo, 2007, Nucleic Acids Res..

HyperModules: identifying clinically and phenotypically significant network modules with disease mutations for biomarker discovery

Gary D. Bader, Gary D Bader, Jüri Reimand, 2014, Bioinform..

Pathway enrichment analysis and visualization of omics data using g:Profiler, GSEA, Cytoscape and EnrichmentMap

Gary D Bader, Jeff Wong, Ruth Isserlin, 2019, Nature Protocols.

Discovery and characterization of coding and non-coding driver mutations in more than 2,500 whole cancer genomes

Lucas Lochovsky, Donghoon Lee, Chris Sander, 2017, bioRxiv.

Domain‐mediated protein interaction prediction: From genome to network

Gary D Bader, Jüri Reimand, Shirley Hui, 2012, FEBS letters.

Research resource: interactome of human embryo implantation: identification of gene expression pathways, regulation, and integrated regulatory networks.

Jaak Vilo, Jüri Reimand, Maire Peters, 2012, Molecular endocrinology.

Impact of knowledge accumulation on pathway enrichment analysis

Jüri Reimand, Joel Weiser, Mona Meyer, 2016, bioRxiv.

The mutational landscape of phosphorylation signaling in cancer

Gary D. Bader, Gary D Bader, Omar Wagih, 2013, Scientific Reports.

Ranking Genes by Their Co‐expression to Subsets of Pathway Members

Hedi Peterson, Jaak Vilo, Jüri Reimand, 2009, Annals of the New York Academy of Sciences.

Genome sequencing of SHH medulloblastoma predicts genotype-related response to smoothened inhibition.

Roland Eils, Rainer König, Gary D Bader, 2014, Cancer cell.

Pathway and network analysis of more than 2,500 whole cancer genomes

Kathleen Marchal, Alfonso Valencia, Icgc, 2018, bioRxiv.

Divergent clonal selection dominates medulloblastoma at recurrence

Gary D. Bader, Steven J. M. Jones, Gary D Bader, 2016, Nature.

Candidate Cancer Driver Mutations in Distal Regulatory Elements and Long-Range Chromatin Interaction Networks.

Mathieu Lupien, Michael D. Wilson, Paul C Boutros, 2020, Molecular cell.

New Brain Tumor Entities Emerge from Molecular Classification of CNS-PNETs

Roland Eils, Pieter Wesseling, Martin Sill, 2016, Cell.

The FunGenES Database: A Genomics Resource for Mouse Embryonic Stem Cell Differentiation

Raivo Kolde, Jaak Vilo, Herbert Schulz, 2009, PloS one.

Frequent mutations in acetylation and ubiquitination sites suggest novel driver mechanisms of cancer

Gary D. Bader, Gary D Bader, Jüri Reimand, 2016, Genome Medicine.

Comprehensive transcriptome analysis of mouse embryonic stem cell adipogenesis unravels new processes of adipocyte development

Hedi Peterson, Meelis Kull, Raivo Kolde, 2010, Genome Biology.

Candidate cancer driver mutations in superenhancers and long-range chromatin interaction networks

Parisa Mazrooei, Mathieu Lupien, Paul C. Boutros, 2017, bioRxiv.