Shoshana J Wodak

发表

Blind predictions of protein interfaces by docking calculations in CAPRI

Marc F Lensink, Shoshana J Wodak, S. Wodak, 2010, Proteins.

Sabry Razick, Shoshana J Wodak, Andrei L Turinsky, 2011, Nature Biotechnology.

Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: A CASP‐CAPRI experiment

Daisuke Kihara, Keehyoung Joo, Daisuke Kuroda, 2016, Proteins.

The challenge of modeling protein assemblies: the CASP12‐CAPRI experiment

Sameer Velankar, Minkyung Baek, Chaok Seok, 2018, Proteins.

Editorial overview: Multi-protein assemblies in signaling.

Shoshana J Wodak, Arun K Shukla, 2016, Current opinion in structural biology.

Navigating the global protein-protein interaction landscape using iRefWeb.

Andrei L. Turinsky, Brian Turner, Sabry Razick, 2014, Methods in molecular biology.

Community-wide assessment of protein-interface modeling suggests improvements to design methodology.

Kengo Kinoshita, Haruki Nakamura, Genki Terashi, 2011, Journal of molecular biology.

Blind prediction of homo‐ and hetero‐protein complexes: The CASP13‐CAPRI experiment

Elodie Laine, Alessandra Carbone, Adam Liwo, 2019, Proteins.

Allostery in Its Many Disguises: From Theory to Applications.

Ruth Nussinov, Ivet Bahar, Dima Kozakov, 2019, Structure.

Docking, scoring, and affinity prediction in CAPRI

Marc F Lensink, Shoshana J Wodak, S. Wodak, 2013, Proteins.

Modeling protein assemblies: Critical Assessment of Predicted Interactions (CAPRI) 15 years hence.

Shoshana J Wodak, Joel Janin, J. Janin, 2017, Proteins.

A benchmark testing ground for integrating homology modeling and protein docking

Zhiping Weng, Alexandre M J J Bonvin, Dima Kozakov, 2017, Proteins.

CAPRI: A Critical Assessment of PRedicted Interactions

Sandor Vajda, Michael J E Sternberg, Joël Janin, 2003, Proteins.

High-throughput analyses and curation of protein interactions in yeast.

Shoshana J Wodak, Shuye Pu, Jim Vlasblom, 2011, Methods in molecular biology.

Protein-protein interaction networks: the puzzling riches.

Andrei L. Turinsky, James Vlasblom, Shoshana J Wodak, 2013, Current opinion in structural biology.

Computational protein design is a challenge for implicit solvation models.

Alfonso Jaramillo, Shoshana J Wodak, S. Wodak, 2005, Biophysical journal.

Next-generation protein engineering targets influenza

Shoshana J Wodak, S. Wodak, 2012, Nature Biotechnology.

From the Mediterranean coast to the shores of Lake Ontario: CAPRI's premiere on the American continent

Shoshana J Wodak, 2007, Proteins.

Folding free energy function selects native-like protein sequences in the core but not on the surface

Lorenz Wernisch, Alfonso Jaramillo, Shoshana J Wodak, 2002, Proceedings of the National Academy of Sciences of the United States of America.

Modularity of the transcriptional response of protein complexes in yeast.

Didier Gonze, Shoshana J Wodak, Chris Orsi, 2006, Journal of molecular biology.

Modeling protein‐protein, protein‐peptide, and protein‐oligosaccharide complexes: CAPRI 7th edition

Sameer Velankar, Marc F Lensink, Shoshana J Wodak, 2019, Proteins.

Prediction of protein-protein interactions: the CAPRI experiment, its evaluation and implications.

Shoshana J Wodak, S. Wodak, R. Méndez, 2004, Current opinion in structural biology.

Computational approaches to investigating allostery.

Ora Schueler-Furman, Shoshana J Wodak, O. Schueler‐Furman, 2016, Current opinion in structural biology.

Automatic Sequence Design of Major Histocompatibility Complex Class I Binding Peptides Impairing CD8+ T Cell Recognition* 210

Alfonso Jaramillo, Shoshana J Wodak, S. Wodak, 2003, The Journal of Biological Chemistry.

The evolutionary landscape of the chromatin modification machinery reveals lineage specific gains, expansions, and losses

Andrei L. Turinsky, Zhaolei Zhang, John Parkinson, 2010, Proteins.

Identifying structural domains in proteins.

Lorenz Wernisch, Shoshana J Wodak, S. Wodak, 2005, Methods of biochemical analysis.

Protein modules and protein-protein interaction. Introduction.

Joël Janin, Shoshana J Wodak, J. Janin, 2002, Advances in protein chemistry.

Identifying functional modules in the physical interactome of Saccharomyces cerevisiae

Andrew Emili, Shoshana J Wodak, Jack Greenblatt, 2007, Proteomics.

Intertwined associations in structures of homooligomeric proteins.

Shoshana J Wodak, S. Wodak, A. Malevanets, 2013, Structure.

Challenges and Rewards of Interaction Proteomics *

James Vlasblom, Shoshana J Wodak, Shuye Pu, 2009, Molecular & Cellular Proteomics.

Docking and scoring protein interactions: CAPRI 2009

Marc F Lensink, Shoshana J Wodak, S. Wodak, 2010, Proteins.

Mechanism and energy landscape of domain swapping in the B1 domain of protein G.

Fernanda L. Sirota, Shoshana J Wodak, S. Wodak, 2008, Journal of molecular biology.