Shigeyuki Yokoyama

发表

Solution structure of the SH3 domain of human Nostrin

H. Abe, Naoya Tochio, K. Miyamoto, 2007 .

Solution structure of the human SHIP SH2 domain

Seizo Koshiba, Takanori Kigawa, Shigeyuki Yokoyama, 2008 .

Solution structure of WWE domain in BAB28015

Tohru Terada, Osamu Ohara, Eiko Seki, 2004 .

Solution structure of PHD domain in PHD finger family protein

Tohru Terada, Makoto Inoue, Takanori Kigawa, 2004 .

Solution structure of the PCI domain

Yoshihide Hayashizaki, Takanori Kigawa, Shigeyuki Yokoyama, 2004 .

Structure of Gankyrin-S6ATPase photo-cross-linked site-specifically, and incoporated by genetic code expansion

Shin Sato, Kensaku Sakamoto, Shigeyuki Yokoyama, 2010 .

FGF9 monomer/dimer equilibrium regulates extracellular matrix affinity and tissue diffusion

Makoto Taiji, Sachiko Iseki, Haruhiko Koseki, 2009, Nature Genetics.

Reassignment of a rare sense codon to a non-canonical amino acid in Escherichia coli

Atsushi Yamaguchi, Shigeyuki Yokoyama, Satoshi Kira, 2015, Nucleic acids research.

Automated system for high-throughput protein production using the dialysis cell-free method.

Makoto Inoue, Takanori Kigawa, Shigeyuki Yokoyama, 2009, Protein expression and purification.

Incorporation of a Doubly Functionalized Synthetic Amino Acid into Proteins for Creating Chemical and Light-Induced Conjugates.

Takayoshi Watanabe, Shigeyuki Yokoyama, Yoshihisa Fujiwara, 2016, Bioconjugate chemistry.

Biochemical and structural studies on the high affinity of Hsp70 for ADP

Shigeyuki Yokoyama, Mikako Shirouzu, S. Yokoyama, 2011, Protein science : a publication of the Protein Society.

An enzyme with a deep trefoil knot for the active-site architecture.

Shigeyuki Yokoyama, Osamu Nureki, Seiki Kuramitsu, 2002, Acta crystallographica. Section D, Biological crystallography.

Solution structure of the major DNA-binding domain of Arabidopsis thaliana ethylene-insensitive3-like3.

Kazuo Shinozaki, Motoaki Seki, Eiko Seki, 2005, Journal of molecular biology.

Neisseria meningitidis Translation Elongation Factor P and Its Active-Site Arginine Residue Are Essential for Cell Viability

Shigeyuki Yokoyama, Takehiro Suzuki, S. Yokoyama, 2016, PloS one.

Tertiary structure checkpoint at anticodon loop modification in tRNA functional maturation

Shigeyuki Yokoyama, Sakurako Goto-Ito, Yoshitaka Bessho, 2009, Nature Structural &Molecular Biology.

Unique protein architecture of alanyl-tRNA synthetase for aminoacylation, editing, and dimerization

Shigeyuki Yokoyama, S. Yokoyama, R. Fukunaga, 2009, Proceedings of the National Academy of Sciences.

Crystal Structure of the Complex of Human Epidermal Growth Factor and Receptor Extracellular Domains

Jae-Hoon Kim, Kazuki Saito, Shigeyuki Yokoyama, 2002, Cell.

Preparation of Escherichia coli cell extract for highly productive cell-free protein expression

Takanori Kigawa, Shigeyuki Yokoyama, Takashi Yabuki, 2004, Journal of Structural and Functional Genomics.

Theoretical Analysis of Activity Cliffs among Benzofuranone-Class Pim1 Inhibitors Using the Fragment Molecular Orbital Method with Molecular Mechanics Poisson-Boltzmann Surface Area (FMO+MM-PBSA) Approach

Kaori Fukuzawa, Shigeyuki Yokoyama, Shigenori Tanaka, 2017, J. Chem. Inf. Model..

An unnatural hydrophobic base pair system: site-specific incorporation of nucleotide analogs into DNA and RNA

Yoko Harada, Tsuyoshi Fujiwara, Shigeyuki Yokoyama, 2006, Nature Methods.

Structure of eukaryotic RNA polymerase II elongation complex bound with Elf1, Spt4/5 and TFIIS

Shigeyuki Yokoyama, Mikako Shirouzu, Takeshi Yokoyama, 2017 .

A new method for induced fit docking (GENIUS) and its application to virtual screening of novel HCV NS3-4A protease inhibitors.

Masahiko Ito, Daisuke Takaya, Hideaki Umeyama, 2011, Bioorganic & Medicinal Chemistry.

RNA targeting by the type III-A CRISPR-Cas Csm complex of Thermus thermophilus.

Albert J R Heck, Henning Urlaub, Shigeyuki Yokoyama, 2014, Molecular cell.

Structural Basis for Substrate Selection by T7 RNA Polymerase

Shigeyuki Yokoyama, Vsevolod Patlan, S. Yokoyama, 2004, Cell.

State Transitions by Molecules State Transitions by Molecules

Masami Hagiya, Daisuke Kiga, Shigeyuki Yokoyama, 1998 .

Solution structure of the CAP-GLY domain from human cylindromatosis tomour-suppressor CYLD

Seizo Koshiba, Takanori Kigawa, Shigeyuki Yokoyama, 2002 .

The Use of the Escherichia coli Cell‐Free Protein Synthesis for Structural Biology and Structural Proteomics

Satoru Watanabe, Eiko Seki, Makoto Inoue, 2008 .

Efficient Decoding of the UAG Triplet as a Full-Fledged Sense Codon Enhances the Growth of a prfA-Deficient Strain of Escherichia coli

Shigeyuki Yokoyama, Nobumasa Hino, Kensaku Sakamoto, 2012, Journal of bacteriology.

Mechanism of molecular interactions for tRNA(Val) recognition by valyl-tRNA synthetase.

Shigeyuki Yokoyama, Osamu Nureki, O. Nureki, 2003, RNA.

Characterization and prediction of linker sequences of multi-domain proteins by a neural network

Yutaka Kuroda, Shigeyuki Yokoyama, S. Yokoyama, 2004, Journal of Structural and Functional Genomics.

ATP binding by glutamyl‐tRNA synthetase is switched to the productive mode by tRNA binding

Shigeyuki Yokoyama, Osamu Nureki, O. Nureki, 2003, The EMBO journal.

An engineered Escherichia coli tyrosyl–tRNA synthetase for site-specific incorporation of an unnatural amino acid into proteins in eukaryotic translation and its application in a wheat germ cell-free system

Daisuke Kiga, Yoko Harada, Takanori Kigawa, 2002, Proceedings of the National Academy of Sciences of the United States of America.

Structural basis for the dual RNA-recognition modes of human Tra2-β RRM

Sumio Sugano, Peter Güntert, Satoru Watanabe, 2010, Nucleic acids research.

Structural and sequence comparisons arising from the solution structure of the transcription elongation factor NusG from Thermus thermophilus

Shigeyuki Yokoyama, Seiki Kuramitsu, Mikako Shirouzu, 2004, Proteins: Structure, Function, and Bioinformatics.

Improvement of domain linker prediction by incorporating loop-length-dependent characteristics.

Yutaka Kuroda, Shigeyuki Yokoyama, S. Yokoyama, 2006, Biopolymers.

Crystal Structure of the Human BRD2 Bromodomain

Masami Horikoshi, Shigeyuki Yokoyama, Takashi Umehara, 2006, Journal of Biological Chemistry.

Crystal Structure Of Enoyl-CoA Hydrates Subunit I (gk_2039) Other Form From Geobacillus Kaustophilus HTA426

Jeyaraman Jeyakanthan, Shigeyuki Yokoyama, Proteomics Initiative, 2008 .

Curved EFC/F-BAR-Domain Dimers Are Joined End to End into a Filament for Membrane Invagination in Endocytosis

Sumio Sugano, Masaki Yamamoto, Shigeyuki Yokoyama, 2007, Cell.

Allosteric regulation of γ-secretase activity by a phenylimidazole-type γ-secretase modulator

Takeshi Iwatsubo, Satoko Osawa, Shigeyuki Yokoyama, 2014, Proceedings of the National Academy of Sciences.

Crystal structure of the homologous-pairing domain from the human Rad52 recombinase in the undecameric form.

Shigeyuki Yokoyama, Osamu Nureki, Ryuichiro Ishitani, 2002, Molecular cell.

Crystal structure of the hypothetical protein TTHA1013 from Thermus thermophilus HB8

Shigeyuki Yokoyama, Seiki Kuramitsu, Mikako Shirouzu, 2005, Proteins.

Structure of D-lactate dehydrogenase from Aquifex aeolicus complexed with NAD(+) and lactic acid (or pyruvate).

M. J. Ellis, Shigeyuki Yokoyama, Seiki Kuramitsu, 2009, Acta crystallographica. Section F, Structural biology and crystallization communications.

A snapshot of the 30S ribosomal subunit capturing mRNA via the Shine-Dalgarno interaction.

Shigeyuki Yokoyama, Frank Schluenzen, Mikako Shirouzu, 2007, Structure.

Let-7 microRNA-mediated mRNA deadenylation and translational repression in a mammalian cell-free system.

Shigeyuki Yokoyama, Osamu Ohara, O. Ohara, 2007, Genes & development.

Structural basis for functional mimicry of long-variable-arm tRNA by transfer-messenger RNA

Shigeyuki Yokoyama, Seiki Kuramitsu, Mikako Shirouzu, 2007, Proceedings of the National Academy of Sciences.

Conserved protein TTHA1554 from Thermus thermophilus HB8 binds to glutamine synthetase and cystathionine beta-lyase.

Ryoichi Arai, Shigeyuki Yokoyama, Seiki Kuramitsu, 2005, Biochimica et biophysica acta.

Highly specific unnatural base pair systems as a third base pair for PCR amplification

Shigeyuki Yokoyama, Ichiro Hirao, Michiko Kimoto, 2011, Nucleic acids research.

Patent protection for protein structure analysis

Koichi Sumikura, Shigeyuki Yokoyama, Rie Nakajima, 2004, Nature Biotechnology.

Crystal structure of the conserved protein TT1542 from Thermus thermophilus HB8

Kengo Kinoshita, Haruki Nakamura, Motonori Ota, 2003, Protein science : a publication of the Protein Society.

Solution structure of the rhodanese homology domain At4g01050(175–295) from Arabidopsis thaliana

Kazuo Shinozaki, Peter Güntert, Motoaki Seki, 2005, Protein science : a publication of the Protein Society.

Mutational separation of two pathways for editing by a class I tRNA synthetase.

Paul Schimmel, Shigeyuki Yokoyama, Osamu Nureki, 2002, Molecular cell.

Crystal structure of a conserved hypothetical protein TT1751 from Thermus thermophilus HB8.

Shigeyuki Yokoyama, Seiki Kuramitsu, Mikako Shirouzu, 2004, Proteins.

Structure-based functional identification of a novel heme-binding protein from Thermus thermophilus HB8

Shigeyuki Yokoyama, Seiki Kuramitsu, Ryoji Masui, 2004, Journal of Structural and Functional Genomics.

Structural basis for recognition of the tra mRNA precursor by the Sex-lethal protein

Kazuki Kurimoto, Shigeyuki Yokoyama, Osamu Nureki, 1999, Nature.

Structural basis for the recognition between the regulatory particles Nas6 and Rpt3 of the yeast 26S proteasome.

Masami Horikoshi, Shigeyuki Yokoyama, Takashi Umehara, 2007, Biochemical and biophysical research communications.

Crystal structure of a conserved hypothetical protein TT1751 from Thermus thermophilus HB8

Shigeyuki Yokoyama, Seiki Kuramitsu, Mikako Shirouzu, 2004 .

Solution structure of the DFF-C domain of DFF45/ICAD. A structural basis for the regulation of apoptotic DNA fragmentation.

Yutaka Kuroda, Seizo Koshiba, Takanori Kigawa, 2002, Journal of molecular biology.

Solution structure of an atypical WW domain in a novel β‐clam‐like dimeric form

Peter Güntert, Satoru Watanabe, Naoya Tochio, 2007 .

Regulation through the Secondary Channel—Structural Framework for ppGpp-DksA Synergism during Transcription

Shigeyuki Yokoyama, Irina Artsimovitch, S. Yokoyama, 2004, Cell.

Multistep engineering of pyrrolysyl-tRNA synthetase to genetically encode N(epsilon)-(o-azidobenzyloxycarbonyl) lysine for site-specific protein modification.

Ryohei Ishii, Shigeyuki Yokoyama, Kensaku Sakamoto, 2008, Chemistry & biology.

Structural basis of the water-assisted asparagine recognition by asparaginyl-tRNA synthetase.

Wataru Iwasaki, Shigeyuki Yokoyama, Seiki Kuramitsu, 2006, Journal of molecular biology.

Structural basis for interaction of the ribosome with the switch regions of GTP-bound elongation factors.

Shigeyuki Yokoyama, Christian M T Spahn, Mikako Shirouzu, 2007, Molecular cell.

Structural basis for defects of Keap1 activity provoked by its point mutations in lung cancer.

Tsutomu Ohta, Masayuki Yamamoto, Shigeyuki Yokoyama, 2006, Molecular cell.

Protein expression systems for structural genomics and proteomics.

Shigeyuki Yokoyama, S. Yokoyama, 2003, Current opinion in chemical biology.

Cloning, expression, purification, crystallization and initial crystallographic analysis of transcription factor DksA from Escherichia coli.

Shigeyuki Yokoyama, Irina Artsimovitch, S. Yokoyama, 2004, Acta crystallographica. Section D, Biological crystallography.

A paralog of lysyl-tRNA synthetase aminoacylates a conserved lysine residue in translation elongation factor P

Ryohei Ishii, Shigeyuki Yokoyama, S. Yokoyama, 2010, Nature Structural &Molecular Biology.

Crystal Structure of the Ca2+/Calmodulin-dependent Protein Kinase Kinase in Complex with the Inhibitor STO-609*

Shigeyuki Yokoyama, Takashi Kadowaki, Mikako Shirouzu, 2011, The Journal of Biological Chemistry.

Crystal structure of uncharacterized protein TTHA1756 from Thermus thermophilus HB8: Structural variety in UPF0150 family proteins

Shigeyuki Yokoyama, Seiki Kuramitsu, S. Yokoyama, 2008, Proteins.

Structural basis for anticodon recognition by discriminating glutamyl-tRNA synthetase

Shigeyuki Yokoyama, Osamu Nureki, O. Nureki, 2001, Nature Structural Biology.

Letter to the Editor: NMR assignment of the SH2 domain from the human feline sarcoma oncogene FES

Sumio Sugano, Peter Güntert, Seizo Koshiba, 2004, Journal of biomolecular NMR.

KUJIRA, a package of integrated modules for systematic and interactive analysis of NMR data directed to high-throughput NMR structure studies

Peter Güntert, Naoya Tochio, Seizo Koshiba, 2007, Journal of biomolecular NMR.

Structural genomics projects in Japan

Yutaka Kuroda, Kunio Miki, Takanori Kigawa, 2000, Nature Structural Biology.

A Rac GTPase-Activating Protein, MgcRacGAP, Is a Nuclear Localizing Signal-Containing Nuclear Chaperone in the Activation of STAT Transcription Factors

Tetsuya Hori, Toshiyuki Fukada, Makoto Inoue, 2009, Molecular and Cellular Biology.

An unnatural hydrophobic base pair with shape complementarity between pyrrole-2-carbaldehyde and 9-methylimidazo[(4,5)-b]pyridine.

Shigeyuki Yokoyama, Ichiro Hirao, Michiko Kimoto, 2003, Journal of the American Chemical Society.

Structural snapshots of the KMSKS loop rearrangement for amino acid activation by bacterial tyrosyl-tRNA synthetase.

Shigeyuki Yokoyama, Ryo Sekine, Kensaku Sakamoto, 2005, Journal of molecular biology.

Nuclear magnetic resonance and molecular dynamics studies on the interactions of the Ras-binding domain of Raf-1 with wild-type and mutant Ras proteins.

Toshikazu Ebisuzaki, Tohru Terada, Ernest D. Laue, 1999, Journal of molecular biology.

Structural Basis for Acetylated Histone H4 Recognition by the Human BRD2 Bromodomain*

Shigeyuki Yokoyama, Takashi Umehara, Keiko Ozato, 2010, The Journal of Biological Chemistry.

Simplification of the genetic code: restricted diversity of genetically encoded amino acids

Daisuke Kiga, Takanori Kigawa, Shigeyuki Yokoyama, 2012, Nucleic acids research.

Novel Mechanism of Interaction of p85 Subunit of Phosphatidylinositol 3-Kinase and ErbB3 Receptor-derived Phosphotyrosyl Peptides*

Akihiko Konagaya, Makoto Taiji, Tetsu Narumi, 2005, Journal of Biological Chemistry.

Structure, dynamics, and function of RNA modification enzymes.

Shigeyuki Yokoyama, Osamu Nureki, Ryuichiro Ishitani, 2008, Current opinion in structural biology.

Letter to the Editor: NMR assignment of the hypothetical ENTH-VHS domain At3g16270 from Arabidopsis thaliana

Kazuo Shinozaki, Peter Güntert, Motoaki Seki, 2004, Journal of biomolecular NMR.

Efficient PCR amplification by an unnatural base pair system.

Shigeyuki Yokoyama, Ichiro Hirao, Michiko Kimoto, 2008, Nucleic acids symposium series.

Structural Insights into the Thermus thermophilus ADP-ribose Pyrophosphatase Mechanism via Crystal Structures with the Bound Substrate and Metal*

Shigeyuki Yokoyama, Seiki Kuramitsu, Ryoji Masui, 2004, Journal of Biological Chemistry.

An efficient mammalian cell-free translation system supplemented with translation factors.

Shigeyuki Yokoyama, Nahum Sonenberg, N. Sonenberg, 2006, Protein expression and purification.

Interaction analysis between tmRNA and SmpB from Thermus thermophilus.

Gota Kawai, Akira Muto, Shigeyuki Yokoyama, 2005, Journal of biochemistry.

Structural basis for orthogonal tRNA specificities of tyrosyl-tRNA synthetases for genetic code expansion

Shigeyuki Yokoyama, Osamu Nureki, Ryuichiro Ishitani, 2003, Nature Structural Biology.

Structural Basis for Double-Sieve Discrimination of L-Valine from L-Isoleucine and L-Threonine by the Complex of tRNAVal and Valyl-tRNA Synthetase

Shigeyuki Yokoyama, Osamu Nureki, O. Nureki, 2000, Cell.

Deep knot structure for construction of active site and cofactor binding site of tRNA modification enzyme.

Hiroyuki Hori, Ryohei Ishii, Shigeyuki Yokoyama, 2004, Structure.

SURVEY AND SUMMARY: Roles of 5-substituents of tRNA wobble uridines in the recognition of purine-ending codons

Shigeyuki Yokoyama, Kazuyuki Takai, S. Yokoyama, 2003, Nucleic acids research.

Structural Evidence for Loose Linkage between Ligand Binding and Kinase Activation in the Epidermal Growth Factor Receptor

Shigeyuki Yokoyama, Timothy A. Springer, Jieqing Zhu, 2010, Molecular and Cellular Biology.

Crystal structure of a predicted phosphoribosyltransferase (TT1426) from Thermus thermophilus HB8 at 2.01 Å resolution

Shigeyuki Yokoyama, Seiki Kuramitsu, Hiroaki Hamana, 2005, Protein science : a publication of the Protein Society.

Inhibition of a NEDD8 Cascade Restores Restriction of HIV by APOBEC3G

Nevan J. Krogan, Shigeyuki Yokoyama, Linda Yen, 2012, PLoS pathogens.

Solution structure of a BolA‐like protein from Mus musculus

Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, 2004, Protein science : a publication of the Protein Society.

Topological Analysis of MAPK Cascade for Kinetic ErbB Signaling

Takashi Nakakuki, Mariko Hatakeyama, Shigeyuki Yokoyama, 2008, PloS one.

A Pyrrolo-Pyrimidine Derivative Targets Human Primary AML Stem Cells in Vivo

Satoshi Tanaka, Shigeyuki Yokoyama, Hiroshi Kajita, 2013, Science Translational Medicine.

Structure of human ubiquitin-conjugating enzyme E2 G2 (UBE2G2/UBC7).

Ryoichi Arai, Shigeyuki Yokoyama, Mikako Shirouzu, 2006, Acta crystallographica. Section F, Structural biology and crystallization communications.

Computer‐aided NMR assay for detecting natively folded structural domains

Yutaka Kuroda, Shigeyuki Yokoyama, Takayuki Hondoh, 2006, Protein science : a publication of the Protein Society.

Codon and amino-acid specificities of a transfer RNA are both converted by a single post-transcriptional modification

Yoshiyuki Kuchino, Tatsuo Miyazawa, Shigeyuki Yokoyama, 1988, Nature.

Functional convergence of two lysyl-tRNA synthetases with unrelated topologies

Dieter Söll, Shigeyuki Yokoyama, Osamu Nureki, 2002, Nature Structural Biology.

Automated assignment of NMR chemical shifts using peak-particle dynamics simulation with the DYNASSIGN algorithm

Peter Güntert, Shigeyuki Yokoyama, Roland Schmucki, 2009, Journal of biomolecular NMR.

Letter to the Editor: NMR assignment of the hypothetical rhodanese domain At4g01050 from Arabidopsis thaliana

Kazuo Shinozaki, Peter Güntert, Motoaki Seki, 2004, Journal of biomolecular NMR.

Site-specific biotinylation of RNA molecules by transcription using unnatural base pairs

Shigeyuki Yokoyama, Kei Moriyama, Ichiro Hirao, 2005, Nucleic acids research.

A novel zinc-binding motif revealed by solution structures of DNA-binding domains of Arabidopsis SBP-family transcription factors.

Kazuo Shinozaki, Motoaki Seki, Eiko Seki, 2004, Journal of molecular biology.

Aminoacylation complex structures of leucyl-tRNA synthetase and tRNALeu reveal two modes of discriminator-base recognition

Shigeyuki Yokoyama, S. Yokoyama, R. Fukunaga, 2005, Nature Structural &Molecular Biology.

Solution Structure of the B3 DNA Binding Domain of the Arabidopsis Cold-Responsive Transcription Factor RAV1w⃞

Kazuo Shinozaki, Motoaki Seki, Eiko Seki, 2004, The Plant Cell Online.

Codon reassignment in the Escherichia coli genetic code

Shigeyuki Yokoyama, Fumie Iraha, Kensaku Sakamoto, 2010, Nucleic acids research.

Structural insights into the first step of RNA-dependent cysteine biosynthesis in archaea

Shigeyuki Yokoyama, Ryuya Fukunaga, 2007, Nature Structural &Molecular Biology.

An unnatural base pair system for efficient PCR amplification and functionalization of DNA molecules

Shigeyuki Yokoyama, Ichiro Hirao, Michiko Kimoto, 2008, Nucleic acids research.

Solution structure of the SWIRM domain of human histone demethylase LSD1.

Satoru Watanabe, Eiko Seki, Naoya Tochio, 2006, Structure.

A structure‐based strategy for discovery of small ligands binding to functionally unknown proteins: Combination of in silico screening and surface plasmon resonance measurements

Kazuo Shinozaki, Motoaki Seki, Shigeyuki Yokoyama, 2005, Proteomics.

Solution structures of the first and second RNA‐binding domains of human U2 small nuclear ribonucleoprotein particle auxiliary factor (U2AF65)

Shigeyuki Yokoyama, Yutaka Muto, S. Yokoyama, 1999, The EMBO journal.

An unnatural base pair for incorporating amino acid analogs into proteins

Tsuyoshi Fujiwara, Takanori Kigawa, Shigeyuki Yokoyama, 2002, Nature Biotechnology.

Crystal structure of bacterial RNA polymerase bound with a transcription inhibitor protein

Masaki Yamamoto, Shigeyuki Yokoyama, Thirumananseri Kumarevel, 2010, Nature.

Structure of the oncoprotein gankyrin in complex with S6 ATPase of the 26S proteasome.

Yoshihide Hayashizaki, Masami Horikoshi, Shigeyuki Yokoyama, 2007, Structure.

Cavity as a source of conformational fluctuation and high-energy state: high-pressure NMR study of a cavity-enlarged mutant of T4 lysozyme.

Fumio Hirata, Daniel J. Sindhikara, Frans A A Mulder, 2014, Biophysical journal.

Molecular dynamics, free energy, and SPR analyses of the interactions between the SH2 domain of Grb2 and ErbB phosphotyrosyl peptides.

Akihiko Konagaya, Makoto Taiji, Tetsu Narumi, 2003, Biochemistry.

Cell-free methods to produce structurally intact mammalian membrane proteins

Kunio Hirata, Masaki Yamamoto, Yoshio Hirabayashi, 2016, Scientific Reports.

Structural Basis of the Substrate-specific Two-step Catalysis of Long Chain Fatty Acyl-CoA Synthetase Dimer*

Tetsuya Hori, Masaki Yamamoto, Mitsuaki Sugahara, 2004, Journal of Biological Chemistry.

Solution structure of the GUCT domain from human RNA helicase II/Guβ reveals the RRM fold, but implausible RNA interactions

Peter Güntert, Satoru Watanabe, Naoya Tochio, 2009, Proteins.

NMR snapshots of a fluctuating protein structure: ubiquitin at 30 bar-3 kbar.

Shigeyuki Yokoyama, Kazuyuki Akasaka, Ryo Kitahara, 2005, Journal of molecular biology.

Structural insights into the second step of RNA-dependent cysteine biosynthesis in archaea: crystal structure of Sep-tRNA:Cys-tRNA synthase from Archaeoglobus fulgidus.

Shigeyuki Yokoyama, S. Yokoyama, R. Fukunaga, 2007, Journal of molecular biology.

Solution structure of an RNA fragment with the P7/P9.0 region and the 3'-terminal guanosine of the tetrahymena group I intron.

Gota Kawai, Satoru Watanabe, Shigeyuki Yokoyama, 2002, RNA.

Molecular cloning and crystal structural analysis of a novel beta-N-acetylhexosaminidase from Paenibacillus sp. TS12 capable of degrading glycosphingolipids.

Ryohei Ishii, Shigeyuki Yokoyama, Makoto Ito, 2009, Journal of molecular biology.

Solution structure of the Src homology 2 domain from␣the human feline sarcoma oncogene Fes

Sumio Sugano, Peter Güntert, Seizo Koshiba, 2005, Journal of biomolecular NMR.

Lessons from structural genomics.

Thomas C Terwilliger, Shigeyuki Yokoyama, D. Stuart, 2009, Annual review of biophysics.

Homologous-pairing activity of the human DNA-repair proteins Xrcc3⋅Rad51C

Shigeyuki Yokoyama, Shunichi Takeda, Minoru Takata, 2001, Proceedings of the National Academy of Sciences of the United States of America.

Methyl transfer by substrate signaling from a knotted protein fold

Shigeyuki Yokoyama, Thomas Christian, Joanna I Sulkowska, 2016, Nature Structural &Molecular Biology.

Site-specific incorporation of non-natural amino acids into proteins in mammalian cells with an expanded genetic code

Shigeyuki Yokoyama, Nobumasa Hino, Kensaku Sakamoto, 2006, Nature Protocols.

Conformation of ligands bound to the muscarinic acetylcholine receptor.

Shigeyuki Yokoyama, Kazuo Nagasawa, Hiroshi Hirota, 2002, Molecular pharmacology.

In silico functional profiling of small molecules and its applications.

Shigeyuki Yokoyama, Teruki Honma, Tomohiro Sato, 2008, Journal of medicinal chemistry.