Thomas C. Rindflesch

Trevor Cohen, Roger W. Schvaneveldt, Thomas C. Rindflesch, 2010, AAAI Fall Symposium: Quantum Informatics for Cognitive, Social, and Semantic Processes.

Medical Facts to Support Inferencing in Natural Language Processing

Halil Kilicoglu, Serguei V. S. Pakhomov, Marcelo Fiszman, 2005, AMIA.

Semantic MEDLINE for Discovery Browsing: Using Semantic Predications and the Literature-Based Discovery Paradigm to Elucidate a Mechanism for the Obesity Paradox

Marcelo Fiszman, Thomas C. Rindflesch, Christopher M. Miller, 2013, AMIA.

Finding UMLS Metathesaurus concepts in MEDLINE

William T. Hole, Thomas C. Rindflesch, Alan R. Aronson, 2002, AMIA.

Preliminary Evaluation of a Literature-based Discovery Method for Explaining Drug Adverse Effects

Anita Burgun-Parenthoine, Thomas C. Rindflesch, Dimitar Hristovski, 2013, AMIA.

Effects of information and machine learning algorithms on word sense disambiguation with small datasets

Thomas C. Rindflesch, Gondy Leroy, T. Rindflesch, 2005, Int. J. Medical Informatics.

Hierarchical concept indexing of full-text documents in the Unified Medical Language System information sources map

Thomas C. Rindflesch, Alan R. Aronson, Lawrence W. Wright, 1999 .

Leveraging Semantic Knowledge in IRB Databases to Improve Translation Science

Thomas C. Rindflesch, John F. Hurdle, Jeffery R. Botkin, 2007, AMIA.

Natural Language Processing

Thomas C. Rindflesch, T. Rindflesch, 1996, Annual Review of Applied Linguistics.

Link Prediction on the Semantic MEDLINE Network - An Approach to Literature-Based Discovery

Thomas C. Rindflesch, Dimitar Hristovski, Andrej Kastrin, 2014, Discovery Science.

Link Prediction in a MeSH Co-occurrence Network: Preliminary Results

Thomas C. Rindflesch, Dimitar Hristovski, Andrej Kastrin, 2014, MIE.

Expansion-by-Analogy: A Vector Symbolic Approach to Semantic Search

Trevor Cohen, Thomas C. Rindflesch, Dominic Widdows, 2014, QI.

iExplore: Interactive Browsing and Exploring Biomedical Knowledge

Amit P. Sheth, Olivier Bodenreider, Krishnaprasad Thirunarayan, 2012, ISWC 2012.

SemMedDB: a PubMed-scale repository of biomedical semantic predications

Halil Kilicoglu, Dongwook Shin, Marcelo Fiszman, 2012, Bioinform..

Semantic Processing to Enhance Retrieval of Diagnosis Citations from Medline

Charles Sneiderman, Marcelo Fiszman, Thomas C. Rindflesch, 2006, AMIA.

Semantic characteristics of MEDLINE citations useful for therapeutic decision-making

Charles Sneiderman, Marcelo Fiszman, Thomas C. Rindflesch, 2005, AMIA.

Semantic representation of consumer questions and physician answers

Thomas C. Rindflesch, Dagobert Soergel, Laura A. Slaughter, 2006, Int. J. Medical Informatics.

Semantic Relations for Interpreting DNA Microarray Data

Borut Peterlin, Thomas C. Rindflesch, Dimitar Hristovski, 2009, AMIA.

From Bibliography to Test Collection: Enhancing Topical Relevance Assessment for Bibliographic Information Retrieval System Evaluation

Thomas C. Rindflesch, Alan R. Aronson, Carol A. Bean, 1999, AMIA.

Identifying Risk Factors for Metabolic Syndrome in Biomedical Text

Marcelo Fiszman, Thomas C. Rindflesch, Graciela Rosemblat, 2007, AMIA.

Automatic indexing by discipline and high-level categories: Methodology and potential applications.

Thomas C. Rindflesch, Susanne M. Humphrey, Alan R. Aronson, 2011 .

Extracting Semantic Predications from Medline Citations for Pharmacogenomics

Marcelo Fiszman, Thomas C. Rindflesch, Dina Demner-Fushman, 2006, Pacific Symposium on Biocomputing.

Natural language processing: State of the art and prospects for significant progress, a workshop sponsored by the National Library of Medicine

Carol Friedman, Thomas C. Rindflesch, Milton Corn, 2013, J. Biomed. Informatics.

Knowledge-based NLP in Biomedicine: (615572012-011)

Thomas C. Rindflesch, 2012 .

Evolution of Research Topics in MEDLINE

Thomas C. Rindflesch, Dimitar Hristovski, Andrej Kastrin, 2017, AMIA.

Abstraction Summarization for Managing the Biomedical Research Literature

Halil Kilicoglu, Marcelo Fiszman, Thomas C. Rindflesch, 2004, HLT-NAACL 2004.

Automatic semantic interpretation of anatomic spatial relationships in clinical text

Charles Sneiderman, Thomas C. Rindflesch, Carol A. Bean, 1998, AMIA.

Exploiting Semantic Predications in a Graph Database

Dejan Dinevski, Thomas C. Rindflesch, Dimitar Hristovski, 2015, MIE.

Biomedical question answering using semantic relations

Dejan Dinevski, Thomas C. Rindflesch, Dimitar Hristovski, 2015, BMC Bioinformatics.

Olivier Bodenreider, Thomas C. Rindflesch, Anita Burgun, 2001 .

A Compositional Interpretation of Biomedical Event Factuality

Halil Kilicoglu, Thomas C. Rindflesch, Graciela Rosemblat, 2015 .

Identification of anatomical terminology in medical text

Charles Sneiderman, Thomas C. Rindflesch, Carol A. Bean, 1998, AMIA.

Differentiating Sense through Semantic Interaction Data

Charlene R. Weir, Thomas C. Rindflesch, Terri Elizabeth Workman, 2016, AMIA.

Using Symbolic Knowledge in the UMLS to Disambiguate Words in Small Datasets with a Naïve Bayes Classifier

Thomas C. Rindflesch, Gondy Leroy, T. Rindflesch, 2004, MedInfo.

Summarization of an Online Medical Encyclopedia

Halil Kilicoglu, Marcelo Fiszman, Thomas C. Rindflesch, 2004, MedInfo.

An Ensemble Approach for Expanding Queries

Duy Duc An Bui, Thomas C. Rindflesch, Qing Zeng-Treitler, 2012, TREC.

Summarizing Drug Information in Medline Citations

Halil Kilicoglu, Marcelo Fiszman, Thomas C. Rindflesch, 2006, AMIA.

Using Natural Language Processing, LocusLink and the Gene Ontology to Compare OMIM to MEDLINE

Halil Kilicoglu, Thomas C. Rindflesch, Alan R. Aronson, 2004, HLT-NAACL 2004.

A Syntactic Parser with Semantic Filtering for Biomedical Text

Halil Kilicoglu, Gondy Leroy, Hsinchun Chen, 2004 .

Automatic summarization of MEDLINE citations for evidence-based medical treatment: A topic-oriented evaluation

Halil Kilicoglu, Thomas C. Rindflesch, Dina Demner-Fushman, 2009, J. Biomed. Informatics.

Identifying Plausible Adverse Drug Reactions Using Knowledge Extracted from the Literature

Hua Xu, Trevor Cohen, Thomas C. Rindflesch, 2014, AMIA.

Arguments of Nominals in Semantic Interpretation of Biomedical Text

Halil Kilicoglu, Marcelo Fiszman, Thomas C. Rindflesch, 2010, BioNLP@ACL.

Hierarchical Concept Indexing of Full-Text Documents in the Unified Medical Language System® Information Sources Map

Thomas C. Rindflesch, Alan R. Aronson, Lawrence W. Wright, 1999, J. Am. Soc. Inf. Sci..

Assessing the consistency of a biomedical terminology through lexical knowledge

Olivier Bodenreider, Anita Burgun-Parenthoine, Thomas C. Rindflesch, 2002, Int. J. Medical Informatics.

Reconnaissance-Attack Parsing

Thomas C. Rindflesch, Michael B. Kac, Karen L. Ryan, 1986, COLING.

Exploiting Semantic Relations for Literature-Based Discovery

Carol Friedman, Borut Peterlin, Thomas C. Rindflesch, 2006, AMIA.

Discovery at a distance: Farther journeys in predication space

Trevor Cohen, Roger W. Schvaneveldt, Thomas C. Rindflesch, 2012, 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops.

Query Expansion Using the UMLS ® Metathesaurus ®

Thomas C. Rindflesch, Alan R. Aronson, A. Aronson, 1997 .

Sortal anaphora resolution to enhance relation extraction from biomedical literature

Halil Kilicoglu, Marcelo Fiszman, Thomas C. Rindflesch, 2016, BMC Bioinformatics.

Word sense disambiguation by selecting the best semantic type based on Journal Descriptor Indexing: Preliminary experiment

Halil Kilicoglu, Thomas C. Rindflesch, Dina Demner-Fushman, 2006, J. Assoc. Inf. Sci. Technol..

Combining Semantic Relations and DNA Microarray Data for Novel Hypotheses Generation

Borut Peterlin, Thomas C. Rindflesch, Dimitar Hristovski, 2009, BioLINK@ISMB/ECCB.

Predication-based Semantic Indexing: Permutations as a Means to Encode Predications in Semantic Space

Trevor Cohen, Roger W. Schvaneveldt, Thomas C. Rindflesch, 2009, AMIA.

Synonym, Topic Model and Predicate-Based Query Expansion for Retrieving Clinical Documents

Thomas C. Rindflesch, Qing Zeng-Treitler, Jonathan R. Nebeker, 2012, AMIA.

The interaction of domain knowledge and linguistic structure in natural language processing: interpreting hypernymic propositions in biomedical text

Marcelo Fiszman, Thomas C. Rindflesch, T. Rindflesch, 2003, J. Biomed. Informatics.

Determining Prominent Subdomains in Medicine

Thomas C. Rindflesch, Susanne M. Humphrey, Powell J. Bernhardt, 2005, AMIA.

Extracting Molecular Binding Relationships from Biomedical Text

Lawrence Hunter, Thomas C. Rindflesch, Jayant V. Rajan, 2000, ANLP.

Using the Literature-Based Discovery Paradigm to Investigate Drug Mechanisms

Halil Kilicoglu, Thomas C. Rindflesch, Dimitar Hristovski, 2007, AMIA.

Networks of neuroinjury semantic predications to identify biomarkers for mild traumatic brain injury

Han Zhang, Marcelo Fiszman, Thomas C. Rindflesch, 2015, J. Biomed. Semant..

MedTag: A Collection of Biomedical Annotations

Thomas C. Rindflesch, Lawrence H. Smith, Lorraine K. Tanabe, 2005, LBLODMBS@IDMB.

Interpreting comparative constructions in biomedical text

Marcelo Fiszman, Thomas C. Rindflesch, Dina Demner-Fushman, 2007, BioNLP@ACL.

Matching Clinical Observations in Published Cardiology Case Reports to LOINC

Charles Sneiderman, Bruce E. Bray, Thomas C. Rindflesch, 2009 .

Constructing a semantic predication gold standard from the biomedical literature

Halil Kilicoglu, Marcelo Fiszman, Thomas C. Rindflesch, 2011, BMC Bioinformatics.

Evolution of MEDLINE bibliographic database: Preliminary results

Thomas C. Rindflesch, Dimitar Hristovski, Andrej Kastrin, 2016, 2016 IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining (ASONAM).

Integrating a Hypernymic Proposition Interpreter into a Semantic Processor for Biomedical Texts

Halil Kilicoglu, Marcelo Fiszman, Thomas C. Rindflesch, 2003, AMIA.

Semantic MEDLINE: A web application for managing the results of PubMed searches

Halil Kilicoglu, Dongwook Shin, Marcelo Fiszman, 2008, SMBM 2008.

The importance of the lexicon in tagging biological text

Thomas C. Rindflesch, Lawrence H. Smith, W. John Wilbur, 2005, Natural Language Engineering.

Spark, an application based on Serendipitous Knowledge Discovery

Thomas C. Rindflesch, Michael J. Cairelli, Diane Nahl, 2016, J. Biomed. Informatics.

Literature-Based Knowledge Discovery using Natural Language Processing

Carol Friedman, Thomas C. Rindflesch, Dimitar Hristovski, 2008 .

Adapting semantic natural language processing technology to address information overload in influenza epidemic management

Halil Kilicoglu, Dongwook Shin, Alla Keselman, 2010, J. Assoc. Inf. Sci. Technol..

Viewpoint Paper: Towards Automatic Recognition of Scientifically Rigorous Clinical Research Evidence

Halil Kilicoglu, Thomas C. Rindflesch, Dina Demner-Fushman, 2009, J. Am. Medical Informatics Assoc..

MedPost: a part-of-speech tagger for bioMedical text

Thomas C. Rindflesch, Lawrence H. Smith, W. John Wilbur, 2004, Bioinform..

Coordination in reconnaissance-attack parsing

Thomas C. Rindflesch, Michael B. Kac, 1988, COLING.

A methodology for extending domain coverage in SemRep

Halil Kilicoglu, Charles Sneiderman, Dongwook Shin, 2013, J. Biomed. Informatics.

Using Literature-Based Discovery to Explain Adverse Drug Effects

Dejan Dinevski, Anita Burgun-Parenthoine, Thomas C. Rindflesch, 2016, Journal of Medical Systems.

Semantics-based cross-domain collaboration recommendation in the life sciences: Preliminary results

Thomas C. Rindflesch, Dimitar Hristovski, Andrej Kastrin, 2015, 2015 IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining (ASONAM).

Using semantic predications to uncover drug-drug interactions in clinical data

Halil Kilicoglu, Serguei V. S. Pakhomov, Marcelo Fiszman, 2014, J. Biomed. Informatics.

iExplore: A Provenance-based Application for Exploring Biomedical Knowledge

Amit P. Sheth, Olivier Bodenreider, Thomas C. Rindflesch, 2012 .

Unsupervised,corpus-based method for extending a biomedical terminology

Olivier Bodenreider, Anita Burgun-Parenthoine, Thomas C. Rindflesch, 2002, ACL Workshop on Natural Language Processing in the Biomedical Domain.

Finding Schizophrenia's Prozac Emergent Relational Similarity in Predication Space

Trevor Cohen, Roger W. Schvaneveldt, Thomas C. Rindflesch, 2011, QI.

Mining molecular binding terminology from biomedical text

Lawrence Hunter, Thomas C. Rindflesch, Alan R. Aronson, 1999, AMIA.

Many Paths Lead to Discovery: Analogical Retrieval of Cancer Therapies

Trevor Cohen, Roger W. Schvaneveldt, Lance De Vine, 2012, QI.

Semantic Interpretation for the Biomedical Research Literature

Marcelo Fiszman, Thomas C. Rindflesch, Bisharah Libbus, 2005 .

Framing serendipitous information‐seeking behavior for facilitating literature‐based discovery: A proposed model

Marcelo Fiszman, Thomas C. Rindflesch, Diane Nahl, 2014, J. Assoc. Inf. Sci. Technol..

The NLM Indexing Initiative

Olivier Bodenreider, Thomas C. Rindflesch, Susanne M. Humphrey, 2000, AMIA.

Local ambiguity and natural language processing

Thomas C. Rindflesch, 1993 .

Toward Automatic Recognition of High Quality Clinical Evidence

Halil Kilicoglu, Thomas C. Rindflesch, Dina Demner-Fushman, 2008, AMIA.

Evaluating lexical variant generation to improve information retrieval

Allen C. Browne, Thomas C. Rindflesch, Guy Divita, 1998, AMIA.

Semantic Processing to Support Clinical Guideline Development

Bruce E. Bray, Marcelo Fiszman, Thomas C. Rindflesch, 2008, AMIA.

Linguistic aspects of natural language processing

Thomas C. Rindflesch, 1990 .

Investigating the role of interleukin-1 beta and glutamate in inflammatory bowel disease and epilepsy using discovery browsing

Halil Kilicoglu, Marcelo Fiszman, Thomas C. Rindflesch, 2018, Journal of Biomedical Semantics.

The Impact of Directionality in Predications on Text Mining

Marcelo Fiszman, Thomas C. Rindflesch, Gondy Leroy, 2008, Proceedings of the 41st Annual Hawaii International Conference on System Sciences (HICSS 2008).

Discovering protein similarity using natural language processing

Thomas C. Rindflesch, Indra Neil Sarkar, 2002, AMIA.

Multiple Approaches to Fine-Grained Indexing of the Biomedical Literature

Thomas C. Rindflesch, Susanne M. Humphrey, Alan R. Aronson, 2006, Pacific Symposium on Biocomputing.

Identifying Respiratory Findings in Emergency Department Reports for Biosurveillance using MetaMap

Wendy W. Chapman, Marcelo Fiszman, Thomas C. Rindflesch, 2004, MedInfo.

Exploring text mining from MEDLINE

Padmini Srinivasan, Thomas C. Rindflesch, P. Srinivasan, 2002, AMIA.

NLP-based information extraction for managing the molecular biology literature

Thomas C. Rindflesch, Bisharah Libbus, 2002, AMIA.

Semantic Processing for Enhanced Access to Biomedical Knowledge

Thomas C. Rindflesch, Alan R. Aronson, A. Aronson, 2002 .

Identifying Anatomical Concepts in Biomedical Text for Automatic Selection of Images

Halil Kilicoglu, Thomas C. Rindflesch, Michele Tringali, 2004 .

Argument-predicate distance as a filter for enhancing precision in extracting predications on the genetic etiology of disease

Halil Kilicoglu, Marco Masseroli, Thomas C. Rindflesch, 2006, BMC Bioinformatics.

Extending SemRep to the public health domain

Charles Sneiderman, Dongwook Shin, Marcelo Fiszman, 2013, J. Assoc. Inf. Sci. Technol..

Hierarchical Concept Indexing of Full-text Documents in the UMLS ® Information Sources Map 1

Thomas C. Rindflesch, Alan R. Aronson, Lawrence W. Wright, 1998 .

Integrating Natural Language Processing and Biomedical Domain Knowledge Increased Information Retrieval Effectiveness

Thomas C. Rindflesch, T. Rindflesch, 1995 .

Strategies for Mapping Concepts in Gastrointestinal Endoscopy Reports to the UMLS Metathesaurus

Halil Kilicoglu, Olivier Bodenreider, Marcelo Fiszman, 2004 .

Integration of Data from Omic Studies with the Literature-Based Discovery towards Identification of Novel Treatments for Neovascularization in Diabetic Retinopathy

Borut Peterlin, Thomas C. Rindflesch, Dimitar Hristovski, 2013, BioMed research international.

Mining Semantic Relations from MEDLINE Citations: Identifying Potential Biomarkers for Mild Traumatic Brain Injury

Thomas C. Rindflesch, Michael J. Cairelli, Han Zhang, 2011 .

Link Prediction on a Network of Co-occurring MeSH Terms: Towards Literature-based Discovery

Thomas C. Rindflesch, Dimitar Hristovski, Thomas C Rindflesch, 2016, Methods of Information in Medicine.

Using literature-based discovery to identify novel therapeutic approaches.

Borut Peterlin, Thomas C. Rindflesch, Dimitar Hristovski, 2013, Cardiovascular & hematological agents in medicinal chemistry.

Discovering discovery patterns with predication-based Semantic Indexing

Thomas C. Rindflesch, R. Schvaneveldt, D. Widdows, 2012, J. Biomed. Informatics.

Graph-based methods for discovery browsing with semantic predications.

Marcelo Fiszman, Thomas C. Rindflesch, Dimitar Hristovski, 2011, AMIA ... Annual Symposium proceedings. AMIA Symposium.

Large-Scale Structure of a Network of Co-Occurring MeSH Terms: Statistical Analysis of Macroscopic Properties

Thomas C. Rindflesch, T. Rindflesch, D. Hristovski, 2014, PloS one.

EDGAR: extraction of drugs, genes and relations from the biomedical literature.

Thomas C. Rindflesch, L Hunter, T C Rindflesch, 1999, Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing.