Andrew R Jones

发表

Representation of selected-reaction monitoring data in the mzQuantML data standard

Fredrik Levander, Da Qi, Craig Lawless, 2015, Proteomics.

The jmzQuantML programming interface and validator for the mzQuantML data standard

Da Qi, Andrew R Jones, Ritesh Krishna, 2014, Proteomics.

Semi‐automatic tool to describe, store and compare proteomics experiments based on MIAPE compliant reports

Andrew R Jones, J Alberto Medina-Aunon, Juan P Albar, 2010, Proteomics.

ProteoAnnotator – Open source proteogenomics annotation software supporting PSI standards

Andrew R Jones, Fawaz Ghali, Ritesh Krishna, 2014, Proteomics.

Proteomics Standards Initiative: Fifteen Years of Progress and Future Work

Martin Eisenacher, Wout Bittremieux, Yasset Perez-Riverol, 2017, Journal of proteome research.

Proteome Bioinformatics Methods for Studying Histidine Phosphorylation.

Andrew R Jones, Oscar Martin Camacho, O. Camacho, 2020, Methods in molecular biology.

Ten Years of Standardizing Proteomic Data: A Report on the HUPO‐PSI Spring Workshop

Henning Hermjakob, Andrew R Jones, Pierre-Alain Binz, 2012, Proteomics.

FuGE: Functional Genomics Experiment Object Model.

Andrew R Jones, Angel Pizarro, Michael Miller, 2006, Omics : a journal of integrative biology.

FDRAnalysis: a tool for the integrated analysis of tandem mass spectrometry identification results from multiple search engines.

Andrew R Jones, Ritesh Krishna, Jennifer A. Siepen, 2011, Journal of proteome research.

The HUPO Pre‐Congress Proteomics Standards Initiative Workshop HUPO 5th Annual World Congress Long Beach, CA, USA 28 October–1 November 2006

Christian Stephan, Andrew R Jones, Pierre-Alain Binz, 2007, Proteomics.

Toward Increased Reliability, Transparency, and Accessibility in Cross-linking Mass Spectrometry.

Karl Mechtler, Andrew R Jones, Christoph H Borchers, 2020, Structure.

jmzTab: A Java interface to the mzTab data standard

Johannes Griss, Juan Antonio Vizcaíno, Henning Hermjakob, 2014, Proteomics.

Minimum Reporting Guidelines for Proteomics Released by the Proteomics Standards Initiative

Andrew R Jones, Sandra Orchard, S. Orchard, 2008, Molecular & Cellular Proteomics.

IPeak: An open source tool to combine results from multiple MS/MS search engines

Qiang Feng, Xun Xu, Andrew R Jones, 2015, Proteomics.

A strategy capitalizing on synergies: the Reporting Structure for Biological Investigation (RSBI) working group.

Andrew R Jones, Norman Morrison, Susanna-Assunta Sansone, 2006, Omics : a journal of integrative biology.

Five years of progress in the Standardization of Proteomics Data 4th Annual Spring Workshop of the HUPO‐Proteomics Standards Initiative April 23–25, 2007 Ecole Nationale Supérieure (ENS), Lyon, France

Henning Hermjakob, Andrew R Jones, Angel Pizarro, 2007, Proteomics.

jmzIdentML API: A Java interface to the mzIdentML standard for peptide and protein identification data

Juan Antonio Vizcaíno, Henning Hermjakob, Andrew R Jones, 2012, Proteomics.

Modeling and managing experimental data using FuGE.

Martin Eisenacher, Andrew R Jones, Anil Wipat, 2009, Omics : a journal of integrative biology.

Meeting New Challenges: The 2014 HUPO‐PSI/COSMOS Workshop

Henning Hermjakob, Carsten Kettner, Andrew R Jones, 2014, Proteomics.

A standardized framing for reporting protein identifications in mzIdentML 1.2

Martin Eisenacher, Juan Antonio Vizcaíno, Andrew R Jones, 2014, Proteomics.

Preparing to Work with Big Data in Proteomics – A Report on the HUPO‐PSI Spring Workshop

Henning Hermjakob, Andrew R Jones, Pierre-Alain Binz, 2013, Proteomics.

Guidelines for reporting the use of gel electrophoresis in proteomics

Chris F. Taylor, Joachim Klose, Gyorgy Babnigg, 2008, Nature Biotechnology.

The PSI semantic validator: A framework to check MIAPE compliance of proteomics data

Lennart Martens, Henning Hermjakob, Andrew R Jones, 2009, Proteomics.

Bioinformatics challenges and solutions in proteomics as quantitative methods mature.

Andrew R Jones, 2012, Omics : a journal of integrative biology.

A software toolkit and interface for performing stable isotope labeling and top3 quantification using Progenesis LC-MS.

Da Qi, Andrew R Jones, Dong Xia, 2012, Omics : a journal of integrative biology.

Capture and analysis of quantitative proteomic data

Neil Swainston, Andrew R Jones, Jennifer A. Siepen, 2007, Proteomics.

Allele Frequencies Net Database: Improvements for storage of individual genotypes and analysis of existing data.

Andrew R Jones, Derek Middleton, Faviel F Gonzalez-Galarza, 2016, Human immunology.

Guidelines for reporting the use of gel image informatics in proteomics

Johann Joets, Andrew R Jones, Christine Hoogland, 2010, Nature Biotechnology.

mzMLb: a future-proof raw mass spectrometry data format based on standards-compliant mzML and optimized for speed and storage requirements.

Andrew R Jones, Eric W Deutsch, Andrew W Dowsey, 2020, Journal of proteome research.

Entering the Implementation Era A report on the HUPO‐PSI Fall workshop 25–27 September 2006, Washington DC, USA

Henning Hermjakob, Andrew R Jones, Angel Pizarro, 2007, Proteomics.

Neopeptide Analyser: A software tool for neopeptide discovery in proteomics data

Andrew R Jones, Antony McCabe, Mandy Peffers, 2017, Wellcome open research.

The minimum information about a proteomics experiment (MIAPE)

Lennart Martens, Chris F. Taylor, John R Yates, 2007, Nature Biotechnology.

Annual Spring Meeting of the Proteomics Standards Initiative

Henning Hermjakob, Andrew R Jones, Pierre-Alain Binz, 2009, Proteomics.

Numerical Compression Schemes for Proteomics Mass Spectrometry Data*

Lars Malmström, Fredrik Levander, Johan Teleman, 2014, Molecular & Cellular Proteomics.

The Gel Electrophoresis Markup Language (GelML) from the Proteomics Standards Initiative

Henning Hermjakob, Gyorgy Babnigg, Andrew R Jones, 2010, Proteomics.

An Update on Data Standards for Gel Electrophoresis

Andrew R Jones, Frank Gibson, 2007, Proteomics.

A critical appraisal of techniques, software packages, and standards for quantitative proteomic analysis.

Jun Fan, Henning Hermjakob, Craig Lawless, 2012, Omics : a journal of integrative biology.

phpMs: A PHP-Based Mass Spectrometry Utilities Library.

Andrew R Jones, Andrew Collins, Andrew Collins, 2018, Journal of proteome research.

How to submit MS proteomics data to ProteomeXchange via the PRIDE database

Juan Antonio Vizcaíno, Henning Hermjakob, Da Qi, 2014, Proteomics.

nmrML: A Community Supported Open Data Standard for the Description, Storage, and Exchange of NMR Data.

Christoph Steinbeck, Daniel Schober, Jie Hao, 2018, Analytical chemistry.

mzTab-M: A Data Standard for Sharing Quantitative Results in Mass Spectrometry Metabolomics

Martin Eisenacher, Yasset Perez-Riverol, Juan Antonio Vizcaíno, 2019, Analytical chemistry.

A DIGE study on the effects of salbutamol on the rat muscle proteome - an exemplar of best practice for data sharing in proteomics

Andrew R Jones, J Alberto Medina-Aunon, Salvador Martinez-Bartolomé, 2011, BMC Research Notes.

The proBAM and proBed standard formats: enabling a seamless integration of genomics and proteomics data

Juan Antonio Vizcaíno, Andrew R Jones, Fawaz Ghali, 2017, Genome Biology.

A bioinformatics tool for epitope-based vaccine design that accounts for human ethnic diversity: application to emerging infectious diseases.

Andrew R Jones, Bostjan Kobe, Derek Middleton, 2015, Vaccine.

The proteome of Toxoplasma gondii: integration with the genome provides novel insights into gene expression and annotation

John R Yates, Andrew R Jones, Dong Xia, 2008, Genome Biology.

XGAP: a uniform and extensible data model and software platform for genotype and phenotype experiments

Damian Smedley, Klaus Schughart, John M. Hancock, 2010, Genome Biology.