Andrew R. Francis

发表

Conditions for the Evolution of Gene Clusters in Bacterial Genomes

Sara Ballouz, Ruiting Lan, Andrew R. Francis, 2010, PLoS Comput. Biol..

spolTools: online utilities for analyzing spoligotypes of the Mycobacterium tuberculosis complex

Fabio Luciani, Andrew R. Francis, Mark M. Tanaka, 2008, Bioinform..

Which Phylogenetic Networks are Merely Trees with Additional Arcs?

Mike A. Steel, Andrew R. Francis, M. Steel, 2015, Systematic biology.

Models of deletion for visualizing bacterial variation: an application to tuberculosis spoligotypes

Andrew R. Francis, Mark M. Tanaka, Josephine F. Reyes, 2008, BMC Bioinformatics.

Bacterial phylogeny in the Cayley graph

Attila Egri-Nagy, Andrew R. Francis, Volker Gebhardt, 2016, Discret. Math. Algorithms Appl..

Bacterial Genomics and Computational Group Theory: The BioGAP Package for GAP

Attila Egri-Nagy, Andrew R. Francis, Volker Gebhardt, 2014, ICMS.

Algebraic double cut and join

Attila Egri-Nagy, Andrew R. Francis, S. Bhatia, 2014, Journal of Mathematical Biology.

Inferences on the Acquisition of Multi-Drug Resistance in Mycobacterium Tuberculosis Using Molecular Epidemiological Data

Scott A. Sisson, Andrew R. Francis, Mark M. Tanaka, 2017, Handbook of Approximate Bayesian Computation.

Group-theoretic models of the inversion process in bacterial genomes

Attila Egri-Nagy, Andrew R. Francis, Mark M. Tanaka, 2014, Journal of mathematical biology.

An algebraic view of bacterial genome evolution

Andrew R. Francis, A. Francis, 2013, Journal of Mathematical Biology.

An algebraic view of bacterial genome evolution

Andrew R Francis, Andrew R. Francis, A. Francis, 2013, Journal of Mathematical Biology.

Methods of quantifying and visualising outbreaks of tuberculosis using genotypic information.

Andrew R Francis, Andrew R. Francis, Mark M. Tanaka, 2005, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

The epidemiological fitness cost of drug resistance in Mycobacterium tuberculosis

Andrew R. Francis, Mark M. Tanaka, S. Sisson, 2009, Proceedings of the National Academy of Sciences.

Interpreting genotype cluster sizes of Mycobacterium tuberculosis isolates typed with IS6110 and spoligotyping.

Andrew R Francis, Fabio Luciani, Andrew R. Francis, 2008, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

Encoding and ordering X-cactuses

Katharina T. Huber, Vincent Moulton, Taoyang Wu, 2021, Adv. Appl. Math..

Can We “Future‐Proof” Consensus Trees?†

David Bryant, Mike Steel, Andrew Francis, 2016, Systematic biology.

Labellable Phylogenetic Networks

Andrew R. Francis, M. Steel, 2023, bioRxiv.

Brauer and partition diagram models for phylogenetic trees and forests

Andrew R. Francis, P. Jarvis, 2021, Proceedings of the Royal Society A.

Normalising phylogenetic networks.

Mike Steel, Andrew Francis, Andrew R. Francis, 2020, Molecular phylogenetics and evolution.

The Space of Tree-Based Phylogenetic Networks

Andrew R. Francis, Mareike Fischer, 2020, Bulletin of Mathematical Biology.

Rooted NNI moves on tree-based phylogenetic networks

Andrew R. Francis, P. ErdHos, T. Mezei, 2020, 2003.07283.

A partial order and cluster-similarity metric on rooted phylogenetic trees

Andrew R. Francis, A. Francis, Michael Hendriksen, 2020, Journal of Mathematical Biology.

The Space of Tree-Based Phylogenetic Networks

Andrew Francis, Andrew R. Francis, Mareike Fischer, 2019, Bulletin of mathematical biology.

How tree-based is my network? Proximity measures for unrooted phylogenetic networks

Andrew Francis, Andrew R. Francis, Mareike Fischer, 2019, Discret. Appl. Math..

A partial order and cluster-similarity metric on rooted phylogenetic trees

Andrew R. Francis, A. Francis, Michael Hendriksen, 2019, Journal of mathematical biology.

Lattice consensus: A partial order on phylogenetic trees that induces an associatively stable consensus method

Andrew R. Francis, A. Francis, Michael Hendriksen, 2018, 1810.06831.

Bounds for phylogenetic network space metrics

Vincent Moulton, Taoyang Wu, Andrew Francis, 2017, Journal of mathematical biology.

A representation-theoretic approach to the calculation of evolutionary distance in bacteria

Andrew R Francis, Andrew R. Francis, Jeremy G Sumner, 2016, 1612.06035.

An algebraic model for inversion and deletion in bacterial genome rearrangement

Andrew R. Francis, J. D. Mitchell, J. Jonusas, 2022, Journal of Mathematical Biology.

Using Approximate Bayesian Computation to Estimate Tuberculosis Transmission Parameters From Genotype Data

Andrew R. Francis, Mark M. Tanaka, S. Sisson, 2006, Genetics.

Estimating tuberculosis transmission parameters from genotype data using approximate Bayesian computation

Andrew R. Francis, Mark M. Tanaka, S. Sisson, 2006 .

Constructing Embeddings and Isomorphisms of Finite Abstract Semigroups

Andrew R. Francis, James D. Mitchell, A. Francis, 2016, 1603.06204.

Finite Diagram Semigroups: Extending the Computational Horizon

Andrew R. Francis, James D. Mitchell, A. Francis, 2015, 1502.07150.

Identifiability of tree-child phylogenetic networks under a probabilistic recombination-mutation model of evolution.

Vincent Moulton, Andrew Francis, Andrew R. Francis, 2017, Journal of theoretical biology.

An evaluation of indices for quantifying tuberculosis transmission using genotypes of pathogen isolates

Andrew R. Francis, Mark M. Tanaka, A. Francis, 2006, BMC infectious diseases.

Detecting emerging strains of tuberculosis by using spoligotypes

Andrew R Francis, Andrew R. Francis, Mark M. Tanaka, 2006, Proceedings of the National Academy of Sciences.