Martin C. Frith

发表

CARRIE web service: automated transcriptional regulatory network inference and interactive analysis

Peter M. Haverty, Martin C. Frith, Zhiping Weng, 2004, Nucleic Acids Res..

MotifViz: an analysis and visualization tool for motif discovery

Peter M. Haverty, Martin C. Frith, Zhiping Weng, 2004, Nucleic Acids Res..

Theatre: a software tool for detailed comparative analysis and visualization of genomic sequence

Martin C. Frith, Greg Elgar, Martin J. Bishop, 2003, Nucleic Acids Res..

A Simplified Description of Child Tables for Sequence Similarity Search

Martin C. Frith, Anish M. S. Shrestha, 2018, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Algorithms in Bioinformatics

Christian N. S. Pedersen, Martin C. Frith, 2016, Lecture Notes in Computer Science.

CentroidHomfold-LAST: accurate prediction of RNA secondary structure using automatically collected homologous sequences

Koichiro Yamada, Kiyoshi Asai, Martin C. Frith, 2011, Nucleic Acids Res..

RecountDB : a database of mapped and count corrected transcribed sequences

Paul Horton, Kiyoshi Asai, Martin C. Frith, 2011 .

Adding unaligned sequences into an existing alignment using MAFFT and LAST

Kazutaka Katoh, Martin C. Frith, M. Frith, 2012, Bioinform..

A Genetic Algorithm for Motif Finding Based on Statistical Significance

Kenta Nakai, Martin C. Frith, Josep Basha Gutierrez, 2015, IWBBIO.

A bioinformatician’s guide to the forefront of suffix array construction algorithms

Paul Horton, Martin C. Frith, Anish Man Singh Shrestha, 2014, Briefings Bioinform..

BMC Bioinformatics BioMed Central Methodology article Large-scale clustering of CAGE tag expression data

Takio Kurita, Martin C. Frith, Kazuro Shimokawa, 2007 .

Detection of cis -element clusters in higher eukaryotic DNA

Martin C. Frith, Zhiping Weng, Ulla Hansen, 2001, Bioinform..

Theatre: A Novel Tool For The Comparative Investigation and Display of Evolutionary Diversity of Functional and Structural Features in DNA Sequences

Martin C. Frith, Greg Elgar, Martin J. Bishop, 1998, German Conference on Bioinformatics.

Cluster-Buster: finding dense clusters of motifs in DNA sequences

Martin C. Frith, Zhiping Weng, Michael C. Li, 2003, Nucleic Acids Res..

Probabilistic alignments with quality scores: an application to short-read mapping toward accurate SNP/indel detection

Kiyoshi Asai, Martin C. Frith, Michiaki Hamada, 2011, Bioinform..

Parameters for accurate genome alignment

Paul Horton, Martin C. Frith, Michiaki Hamada, 2010, BMC Bioinformatics.

Frameshift alignment: statistics and post-genomic applications

Martin C. Frith, John L. Spouge, Yonil Park, 2014, Bioinform..

A promoter-level mammalian expression atlas

Cesare Furlanello, Finn Drabløs, Carsten O. Daub, 2015 .

Handling uncertainties and biases inherent in the reference genome with EAGLE: Explicit Alternative Genome Likelihood Evaluator

Paul Horton, Martin C. Frith, Jun Sese, 2017 .

In search of true reads: A classification approach to next generation sequencing data selection

Kiyoshi Asai, Martin C. Frith, Edward Wijaya, 2010, 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW).

MEME Suite: tools for motif discovery and searching

Mikael Bodén, William Stafford Noble, Martin C. Frith, 2009, Nucleic Acids Res..

SeqVISTA: a graphical tool for sequence feature visualization and comparison

Martin C. Frith, Zhiping Weng, Zhenjun Hu, 2003, BMC Bioinformatics.

EAGLE: Explicit Alternative Genome Likelihood Evaluator

Martin C. Frith, Jun Sese, Tony Kuo, 2018, BMC Medical Genomics.

Variable-order sequence modeling improves bacterial strain discrimination for Ion Torrent DNA reads

Martin C. Frith, Thomas M. Poulsen, M. Frith, 2017, BMC Bioinformatics.

Training alignment parameters for arbitrary sequencers with LAST-TRAIN

Kiyoshi Asai, Martin C. Frith, Michiaki Hamada, 2016, Bioinform..

An approximate Bayesian approach for mapping paired-end DNA reads to a reference genome

Martin C. Frith, Anish Man Singh Shrestha, 2013, Bioinform..

How sequence alignment scores correspond to probability models

Martin C. Frith, M. Frith, 2019, bioRxiv.

Gapless Local Alignment of Multiple Sequences

Martin C. Frith, Zhiping Weng, John L. Spouge, 2002 .

ALP & FALP: C++ libraries for pairwise local alignment E-values

Martin C. Frith, John L. Spouge, Yonil Park, 2015, Bioinform..

A Tiling Bound for Pairwise Global Sequence Alignment

Martin C. Frith, Paul Horton, 2008 .

Discovering Sequence Motifs with Arbitrary Insertions and Deletions

Martin C. Frith, Bostjan Kobe, Neil F. W. Saunders, 2008, PLoS Comput. Biol..

Minimally overlapping words for sequence similarity search

Martin C. Frith, Laurent Noé, Gregory Kucherov, 2020, bioRxiv.

Improved DNA-versus-Protein Homology Search for Protein Fossils

Martin C. Frith, Yin Yao, 2021, AlCoB.

Gentle Masking of Low-Complexity Sequences Improves Homology Search

Martin C. Frith, M. Frith, 2011, PloS one.

Inferring transcription factor complexes from ChIP-seq data

Martin C. Frith, Timothy L. Bailey, James Johnson, 2011, Nucleic acids research.

Pseudocounts for transcription factor binding sites

Kenta Nakai, Martin C. Frith, K. Nakai, 2008, Nucleic acids research.

Improved search heuristics find 20 000 new alignments between human and mouse genomes

Martin C. Frith, Laurent Noé, M. Frith, 2014, Nucleic acids research.

A pipeline for complete characterization of complex germline rearrangements from long DNA reads

Martin C. Frith, Kazutaka Katoh, Naomichi Matsumoto, 2020, Genome Medicine.

A mostly traditional approach improves alignment of bisulfite-converted DNA

Kiyoshi Asai, Martin C. Frith, M. Frith, 2012, Nucleic acids research.

Finding Protein-Coding Genes through Human Polymorphisms

Paul Horton, Kiyoshi Asai, Martin C. Frith, 2013, PloS one.

DisLex : a Transformation for Discontiguous Suffix Array Construction

Martin C. Frith, M. Frith, P. Horton, 2009 .

MinION Analysis and Reference Consortium: Phase 2 data release and analysis of R9.0 chemistry

Martin C. Frith, David A. Eccles, Hugh E. Olsen, 2017, F1000Research.

Tandem-genotypes: robust detection of tandem repeat expansions from long DNA reads

Martin C. Frith, Naomichi Matsumoto, Yoshihiro Kino, 2019, Genome Biology.

Antisense Transcription in the Mammalian Transcriptome RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium

Boris Lenhard, Martin C. Frith, Jun Kawai, 2005 .