Jaume Bonet

发表

Frag'r'Us: knowledge-based sampling of protein backbone conformations for de novo structure-based protein design

Baldomero Oliva, Joan Segura, Joan Planas-Iglesias, 2014, Bioinform..

rstoolbox - a Python library for large-scale analysis of computational protein design data and structural bioinformatics

Bruno E. Correia, Jaume Bonet, Zander Harteveld, 2019, BMC Bioinformatics.

BnpC: Bayesian non-parametric clustering of single-cell mutation profiles

Niko Beerenwinkel, Jaume Bonet, N. Borgsmueller, 2020, bioRxiv.

iLoops: a protein-protein interaction prediction server based on structural features

Baldomero Oliva, Javier García-García, Joan Planas-Iglesias, 2013, Bioinform..

Understanding protein-protein interactions using local structural features.

Elisenda Feliu, Joan Planas-Iglesias, Baldo Oliva, 2013, Journal of molecular biology.

Structure-based immunogen design — leading the way to the new age of precision vaccines

Jaume Bonet, Fabian Sesterhenn, Bruno E Correia, 2018, Current Opinion in Structural Biology.

SPServer: split-statistical potentials for the analysis of protein structures and protein–protein interactions

Oriol Fornes, Jaume Bonet, Narcis Fernandez-Fuentes, 2021, BMC Bioinform..

Rosetta FunFolDes – A general framework for the computational design of functional proteins

Sarah Wehrle, Jaume Bonet, Thomas Krey, 2018, bioRxiv.

On the prediction of DNA-binding preferences of C2H2-ZF domains using structural models: application on human CTCF

Oriol Fornes, Jaume Bonet, Narcis Fernandez-Fuentes, 2020 .

Macromolecular modeling and design in Rosetta: recent methods and frameworks

Brian D. Weitzner, Lars Malmström, Karen R. Khar, 2020, Nature Methods.

rstoolbox: management and analysis of computationally designed structural ensembles

Andreas Scheck, Bruno E. Correia, Jaume Bonet, 2018, bioRxiv.

Rosetta FunFolDes – a general framework for the computational design of functional proteins

Bruno E. Correia, Sarah Wehrle, Jaume Bonet, 2018 .

ArchDB 2014: structural classification of loops in proteins

Baldomero Oliva, Javier García-García, Joan Planas-Iglesias, 2013, Nucleic Acids Res..

Smotifs as structural local descriptors of supersecondary elements: classification, completeness and applications

Baldomero Oliva, András Fiser, Jaume Bonet, 2014, Bio Algorithms Med Syst..

InteractoMIX: a suite of computational tools to exploit interactomes in biological and clinical research.

Oriol Fornes, Joan Planas-Iglesias, Jaume Bonet, 2016, Biochemical Society transactions.

Characterization of Protein Hubs by Inferring Interacting Motifs from Protein Interactions

Marc A. Martí-Renom, Baldomero Oliva, Andrej Sali, 2007, PLoS Comput. Biol..

De novo protein design enables the precise induction of RSV-neutralizing antibodies

Luciano A. Abriata, John T. Bates, Bruno E. Correia, 2020, Science.

Multivalent antibodies: when design surpasses evolution.

Baldomero Oliva, Jaume Bonet, B. Oliva, 2010, Trends in biotechnology.

Crowdsourced assessment of common genetic contribution to predicting anti-TNF treatment response in rheumatoid arthritis

Matti Pirinen, Jukka Corander, Krister Wennerberg, 2016, Nature Communications.

On the use of knowledge-based potentials for the evaluation of models of protein-protein, protein-DNA, and protein-RNA interactions.

Oriol Fornes, Jaume Bonet, Javier Garcia-Garcia, 2014, Advances in protein chemistry and structural biology.