Narcis Fernandez-Fuentes

发表

Frag'r'Us: knowledge-based sampling of protein backbone conformations for de novo structure-based protein design

Baldomero Oliva, Joan Segura, Joan Planas-Iglesias, 2014, Bioinform..

Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: A CASP‐CAPRI experiment

Daisuke Kihara, Keehyoung Joo, Daisuke Kuroda, 2016, Proteins.

On the mechanisms of protein interactions: predicting their affinity from unbound tertiary structures

Baldomero Oliva, Javier García-García, Joan Planas-Iglesias, 2017, Bioinform..

Including Functional Annotations and Extending the Collection of Structural Classifications of Protein Loops (ArchDB)

Baldomero Oliva, Jordi Espadaler, Narcis Fernandez-Fuentes, 2007, Bioinformatics and biology insights.

Prediction of the conformation and geometry of loops in globular proteins: Testing ArchDB, a structural classification of loops

Baldomero Oliva, Enrique Querol, Michael J E Sternberg, 2005, Proteins.

Improving the prediction of protein binding sites by combining heterogeneous data and Voronoi diagrams

Pamela F. Jones, Joan Segura, Narcis Fernandez-Fuentes, 2011, BMC Bioinformatics.

Multifunctional enzyme engineering by computational design for lignocellulosic valorization

David Bryant, Eleni Ioannou, Narcis Fernandez-Fuentes, 2017 .

A modular perspective of protein structures: application to fragment based loop modeling.

Andras Fiser, Narcis Fernandez-Fuentes, A. Fiser, 2013, Methods in molecular biology.

SPServer: split-statistical potentials for the analysis of protein structures and protein–protein interactions

Oriol Fornes, Jaume Bonet, Narcis Fernandez-Fuentes, 2021, BMC Bioinform..

M4T: a comparative protein structure modeling server

András Fiser, Narcis Fernandez-Fuentes, J. Eduardo Fajardo, 2007, Nucleic Acids Res..

A holistic in silico approach to predict functional sites in protein structures

Joan Segura, Narcis Fernandez-Fuentes, Pamela F. Jones, 2012, Bioinform..

CAPS-DB: a structural classification of helix-capping motifs

Baldomero Oliva, Narcis Fernandez-Fuentes, Joan Segura, 2011, Nucleic Acids Res..

Knowledge-based modeling of peptides at protein interfaces: PiPreD

Baldomero Oliva, Narcis Fernandez-Fuentes, B. Oliva, 2015, Bioinform..

PCRPi-DB: a database of computationally annotated hot spots in protein interfaces

Joan Segura, Narcis Fernandez-Fuentes, J. Segura, 2010, Nucleic Acids Res..

On the prediction of DNA-binding preferences of C2H2-ZF domains using structural models: application on human CTCF

Oriol Fornes, Jaume Bonet, Narcis Fernandez-Fuentes, 2020 .

Galaxy InteractoMIX: An Integrated Computational Platform for the Study of Protein-Protein Interaction Data.

Emre Guney, Joan Planas-Iglesias, Narcis Fernandez-Fuentes, 2020, Journal of molecular biology.

ArchDB: automated protein loop classification as a tool for structural genomics

Baldomero Oliva, Francesc X. Avilés, Enrique Querol, 2004, Nucleic Acids Res..

Genome-wide prediction of prokaryotic two-component system networks using a sequence-based meta-predictor

Martin T. Swain, David E. Whitworth, Narcis Fernandez-Fuentes, 2015, BMC Bioinformatics.

ArchPRED: a template based loop structure prediction server

Jun Zhai, András Fiser, Narcis Fernandez-Fuentes, 2006, Nucleic Acids Res..

Presaging Critical Residues in Protein interfaces-Web Server (PCRPi-W): A Web Server to Chart Hot Spots in Protein Interfaces

Salam A. Assi, Narcis Fernandez-Fuentes, Joan Segura Mora, 2010, PloS one.

Structural Characteristics of Novel Protein Folds

András Fiser, Narcis Fernandez-Fuentes, Joseph M. Dybas, 2010, PLoS Comput. Biol..

Archer : predicting protein function using local structural features. A helpful tool for protein redesign

Baldo Oliva, Joan Planas-Iglesias, Narcis Fernandez-Fuentes, 2015 .

ArchDB 2014: structural classification of loops in proteins

Baldomero Oliva, Javier García-García, Joan Planas-Iglesias, 2013, Nucleic Acids Res..

Smotifs as structural local descriptors of supersecondary elements: classification, completeness and applications

Baldomero Oliva, András Fiser, Jaume Bonet, 2014, Bio Algorithms Med Syst..

InteractoMIX: a suite of computational tools to exploit interactomes in biological and clinical research.

Oriol Fornes, Joan Planas-Iglesias, Jaume Bonet, 2016, Biochemical Society transactions.

Comparative protein structure modeling by combining multiple templates and optimizing sequence-to-structure alignments

András Fiser, Narcis Fernandez-Fuentes, J. Eduardo Fajardo, 2007, Bioinform..

Saturating representation of loop conformational fragments in structure databanks

András Fiser, Narcis Fernandez-Fuentes, A. Fiser, 2006, BMC Structural Biology.

Insights into the mechanism of microtubule stabilization by Taxol

Hui Xiao, Andras Fiser, Narcis Fernandez-Fuentes, 2006, Proceedings of the National Academy of Sciences.

Automated detection of remote homology.

Liisa Holm, Narcis Fernandez-Fuentes, L. Holm, 2002, Current opinion in structural biology.

Small molecule inhibitors of RAS-effector protein interactions derived using an intracellular antibody fragment

Narcis Fernandez-Fuentes, S. Phillips, T. Rabbitts, 2018, Nature Communications.

VORFFIP-Driven Dock: V-D2OCK, a Fast and Accurate Protein Docking Strategy

Pamela F. Jones, Joan Segura, Narcis Fernandez-Fuentes, 2015, PloS one.

A supersecondary structure library and search algorithm for modeling loops in protein structures

Baldomero Oliva, András Fiser, Narcis Fernandez-Fuentes, 2006, Nucleic acids research.

Classification of common functional loops of kinase super‐families

Baldomero Oliva, Enrique Querol, Narcis Fernandez-Fuentes, 2004, Proteins.