Paul A Bates

发表

Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: A CASP‐CAPRI experiment

Daisuke Kihara, Keehyoung Joo, Daisuke Kuroda, 2016, Proteins.

A FIJI macro for quantifying pattern in extracellular matrix

Danielle Park, Paul A Bates, Esther Wershof, 2019, Life Science Alliance.

A machine learning approach for ranking clusters of docked protein‐protein complexes by pairwise cluster comparison

Paul A Bates, Iain H Moal, Erik Pfeiffenberger, 2017, Proteins.

Detection and refinement of encounter complexes for protein–protein docking: Taking account of macromolecular crowding

Xiaofan Li, Paul A Bates, Iain H Moal, 2010, Proteins.

Predicting the structure of protein-protein complexes using the SwarmDock Web Server.

Mieczyslaw Torchala, Paul A Bates, P. Bates, 2014, Methods in molecular biology.

Guided docking: First step to locate potential binding sites

Paul W. Fitzjohn, Paul A Bates, Paul W Fitzjohn, 2003, Proteins.

Community-wide assessment of protein-interface modeling suggests improvements to design methodology.

Kengo Kinoshita, Haruki Nakamura, Genki Terashi, 2011, Journal of molecular biology.

Matrix feedback enables diverse higher-order patterning of the extracellular matrix

Danielle Park, Paul A Bates, Esther Wershof, 2019, PLoS Comput. Biol..

Blind prediction of homo‐ and hetero‐protein complexes: The CASP13‐CAPRI experiment

Elodie Laine, Alessandra Carbone, Adam Liwo, 2019, Proteins.

A Guide for Protein-Protein Docking Using SwarmDock.

Mieczyslaw Torchala, Paul A Bates, Iain H Moal, 2020, Methods in molecular biology.

Novel use of a genetic algorithm for protein structure prediction: Searching template and sequence alignment space

Bruno Contreras-Moreira, Paul A Bates, Paul W Fitzjohn, 2003, Proteins.

Flexible Protein-Protein Docking with SwarmDock.

Paul A Bates, Iain H Moal, Raphael A G Chaleil, 2018, Methods in molecular biology.

Enhanced sampling of protein conformational states for dynamic cross‐docking within the protein‐protein docking server SwarmDock

Mieczyslaw Torchala, Paul A Bates, Raphael A G Chaleil, 2019, Proteins.

Planar polarization of the atypical myosin Dachs orients cell divisions in Drosophila.

Yanlan Mao, Paul A Bates, P. Bates, 2011, Genes & development.

A simple biophysical model emulates budding yeast chromosome condensation

Carmay Lim, Paul A Bates, Tammy M. K. Cheng, 2015, eLife.

In silico protein recombination: enhancing template and sequence alignment selection for comparative protein modelling.

Paul W. Fitzjohn, Bruno Contreras-Moreira, Paul A Bates, 2003, Journal of molecular biology.

Incorporation of flexibility into rigid‐body docking: Applications in rounds 3–5 of CAPRI

Paul W. Fitzjohn, Paul A Bates, Paul W Fitzjohn, 2005, Proteins.

Alternating evolutionary pressure in a genetic algorithm facilitates protein model selection

Marc N. Offman, Paul A Bates, P. Bates, 2008, BMC Structural Biology.

Flexible relaxation of rigid‐body docking solutions

Marcin Król, Paul A Bates, P. Bates, 2007, Proteins.

Comparative modelling: an essential methodology for protein structure prediction in the post-genomic era.

Paul W. Fitzjohn, Bruno Contreras-Moreira, Paul A Bates, 2002, Applied bioinformatics.

Rational engineering of L-asparaginase reveals importance of dual activity for cancer cell toxicity.

Marc N. Offman, Vaskar Saha, Paul A Bates, 2011, Blood.

Cancer networks and beyond: interpreting mutations using the human interactome and protein structure.

Paul A Bates, Tammy M. K. Cheng, S. Gulati, 2013, Seminars in cancer biology.

Refinement of protein‐protein complexes in contact map space with metadynamics simulations

Paul A Bates, Erik Pfeiffenberger, P. Bates, 2018, Proteins.

Agent-based simulation of notch-mediated tip cell selection in angiogenic sprout initialisation.

Holger Gerhardt, Katie Bentley, Paul A Bates, 2008, Journal of theoretical biology.

The γδTCR combines innate immunity with adaptive immunity by utilizing spatially distinct regions for agonist selection and antigen responsiveness

Paul A Bates, Natalie A. Roberts, Raphael A. G. Chaleil, 2018, Nature Immunology.

Development of synchronous VHL syndrome tumors reveals contingencies and constraints to tumor evolution

Francesco Favero, Ignacio Varela, Charles Swanton, 2014, Genome Biology.

A Markov‐chain model description of binding funnels to enhance the ranking of docked solutions

Mieczyslaw Torchala, Paul A Bates, Iain H Moal, 2013, Proteins.