Melissa Haendel

发表

An Ontology-Based Approach to Linking Model Organisms and Resources to Human Diseases

Kara Dolinski, Mike Tyers, Chris Mungall, 2011, ICBO.

obo-relations: 2015-10-29 release

Chris Mungall, Melissa Haendel, James A. Overton, 2015 .

A harmonized meta-knowledgebase of clinical interpretations of cancer genomic variants

Subha Madhavan, Dmitriy Sonkin, Malachi Griffith, 2018, bioRxiv.

The zebrafish anatomy and stage ontologies: representing the anatomy and development of Danio rerio

Monte Westerfield, Melissa Haendel, Yvonne M. Bradford, 2014, Journal of Biomedical Semantics.

Thematic series on biomedical ontologies in JBMS: challenges and new directions

Dietrich Rebholz-Schuhmann, Melissa Haendel, Robert Stevens, 2014, J. Biomed. Semant..

10 simple rules for making data web friendly

Carole Goble, Melissa Haendel, Helen Parkinson, 2015 .

Building a Molecular Glyco-phenotype Ontology to Decipher Undiagnosed Diseases

Melissa Haendel, Matthew H. Brush, Jean-Philippe Gourdine, 2016, ICBO/BioCreative.

The Resource Identification Initiative: A cultural shift in publishing

David N. Kennedy, Jeffrey S. Grethe, Maryann E. Martone, 2015, Neuroinformatics.

Software Discovery Index Workshop Report

Daniel S. Katz, Phil Bourne, Ian Fore, 2015 .

Developing a Reagent Application Ontology within the OBO Foundry Framework

Carlo Torniai, Melissa Haendel, Matthew H. Brush, 2011, ICBO.

Structuring, reuse and analysis of electronic dental data using the Oral Health and Disease Ontology

Alan Ruttenberg, Carlo Torniai, Melissa Haendel, 2020, J. Biomed. Semant..

A sea of standards for omics data: sink or swim?

Melissa Haendel, Jessica D. Tenenbaum, Susanna-Assunta Sansone, 2013, J. Am. Medical Informatics Assoc..

Eagle-i: Ontology-driven Federated Search and Data Entry Tools for Discovering Biomedical Research Resources

Carlo Torniai, Melissa Haendel, Nicole Vasilevsky, 2013, ICBO.

cell-ontology: 2016-09-02 release

Alan Ruttenberg, Chris Mungall, Melissa Haendel, 2016 .

Developing an Application Ontology for Biomedical Resource Annotation and Retrieval: Challenges and Lessons Learned

Carlo Torniai, Melissa Haendel, Matthew H. Brush, 2011, ICBO.

Expanding the Molecular Glycophenotype Ontology to include model organisms and acquired diseases

Melissa Haendel, Matthew H. Brush, Jean-Philippe Gourdine, 2018, ICBO.

SEPIO: A Semantic Model for the Integration and Analysis of Scientific Evidence

Melissa Haendel, Matthew H. Brush, Kent Shefchek, 2016, ICBO/BioCreative.

Achieving human and machine accessibility of cited data in scholarly publications

Ruth E. Duerr, Joan Starr, Simon Hodson, 2015, PeerJ Comput. Sci..

Finding common ground: integrating the eagle-i and VIVO ontologies

Carlo Torniai, Melissa Haendel, Jon Corson-Rikert, 2013, ICBO.

The Zebrafish Information Network: the zebrafish model organism database

Monte Westerfield, Melissa Haendel, Dave Clements, 2005, Nucleic Acids Res..

Gold-standard ontology-based anatomical annotation in the CRAFT Corpus

Lawrence Hunter, William A. Baumgartner, Melissa Haendel, 2017, Database J. Biol. Databases Curation.

Teleost Anatomy Ontology (revision 2012-08-10)

Monte Westerfield, Melissa Haendel, James P. Balhoff, 2015 .

The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability

Alan Ruttenberg, Alexander D. Diehl, Judith A. Blake, 2016, J. Biomed. Semant..

The CTSA Program Center for Data to Health: Leveraging Library Expertise

Rose Relevo, Robin Champieux, Melissa Haendel, 2018 .

Modularization for the Cell Ontology

Alexander D. Diehl, Chris Mungall, Carlo Torniai, 2011, ICBO.

cell-ontology: 2015-08-08 release

Alan Ruttenberg, Chris Mungall, Melissa Haendel, 2015 .

An overview of the BioCreative 2012 Workshop Track III: interactive text mining task

Jeyakumar Natarajan, Zhiyong Lu, K. Bretonnel Cohen, 2013, Database J. Biol. Databases Curation.

Enhancing the Human Phenotype Ontology for Use by the Layperson

Peter N. Robinson, Chris Mungall, Melissa Haendel, 2016, ICBO/BioCreative.

CLO: The cell line ontology

Yue Liu, David J. States, Yu Lin, 2014, Journal of Biomedical Semantics.

cell-ontology: 2015-10-29 release

Alan Ruttenberg, Chris Mungall, Melissa Haendel, 2015 .

Gold-Standard Ontology-Based Annotation of Concepts in Biomedical Text in the CRAFT Corpus: Updates and Extensions

Lawrence Hunter, Melissa Haendel, Michael Bada, 2016, ICBO/BioCreative.

cell-ontology: 2016-02-01 release

Alan Ruttenberg, Chris Mungall, Melissa Haendel, 2016 .

Enabling semantic search in a bio-specimen repository

Carlo Torniai, Melissa Haendel, Shahim Essaid, 2013, ICBO.

Encoding Clinical Data with the Human Phenotype Ontology for Computational Differential Diagnostics

Tudor Groza, Damian Smedley, Peter N. Robinson, 2019, Current protocols in human genetics.

Alignment of Cultured Cell Modeling Across OBO Foundry Ontologies: Key Outcomes, Insights

Alexander D. Diehl, Melissa Haendel, Yongqun He, 2013, ICBO.

Architekturvorschlag für eine offene Hypermedia-Entwicklungsumgebung zur Erstellung verteilter Lernsysteme

Melissa Haendel, Jan L. Plass, E Schoop, 1996 .

What is an anatomy ontology?

Hilmar Lapp, Melissa Haendel, Paula M. Mabee, 2013, Anatomical record.

What's in a Genotype?: An Ontological Characterization for Integration of Genetic Variation Data

Chris Mungall, Melissa Haendel, Nicole L. Washington, 2013, ICBO.

Computing on the anatomical form for disease discovery (338.1)

Melissa Haendel, Christopher J. Mungall, 2014 .

Research resources: curating the new eagle-i discovery system

David Robinson, Carlo Torniai, Melissa Haendel, 2012, Database J. Biol. Databases Curation.

The Porifera Ontology (PORO): enhancing sponge systematics with an anatomy ontology

Chris Mungall, Melissa Haendel, Erik Segerdell, 2014, Journal of Biomedical Semantics.

Aligning the Human Phenotype and Mammalian Phenotype Ontology using Dead Simple Ontology Design Patterns

Peter N. Robinson, Chris Mungall, Melissa Haendel, 2017, ICBO.

eagle-i: An Ontology-Driven Framework For Biomedical Resource Curation And Discovery

Carlo Torniai, Melissa Haendel, Melanie Wilson, 2010 .

The Human Phenotype Ontology in 2017

Tudor Groza, Damian Smedley, Peter N. Robinson, 2016, Nucleic Acids Res..

The influence of disease categories on gene candidate predictions from model organism phenotypes

Damian Smedley, Peter N. Robinson, Chris Mungall, 2014, Journal of Biomedical Semantics.

Enhancing SciENcv through Semantic Research Profile Integration with the VIVO-ISF Ontology

Robin Champieux, Melissa Haendel, David Eichmann, 2016, ICBO/BioCreative.

NLP and Phenotypes: using Ontologies to link Human Diseases to Animal Models

Chris Mungall, Monte Westerfield, Melissa Haendel, 2008, Ontologies and Text Mining for Life Sciences.

Ontology based molecular signatures for immune cell types via gene expression analysis

Alexander D. Diehl, Judith A. Blake, Chris Mungall, 2013, BMC Bioinformatics.

Nose to tail, roots to shoots: spatial descriptors for phenotypic diversity in the Biological Spatial Ontology

Chris Mungall, Melissa Haendel, Paula M. Mabee, 2014, J. Biomed. Semant..

Phenotype Ontologies Traversing All The Organisms (POTATO) workshop aims to reconcile logical definitions across species. Workshop Report

Melissa Haendel, Anne E. Thessen, James P. Balhoff, 2018 .

Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon

Judith A. Blake, Chris Mungall, Melissa Haendel, 2014, Journal of Biomedical Semantics.

The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data

Damian Smedley, Paul N. Schofield, Peter N. Robinson, 2014, Nucleic Acids Res..

The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species

Tudor Groza, Harry Hochheiser, Damian Smedley, 2016, bioRxiv.

Aligning Research Resource and Researcher Representation: The eagle-i and VIVO Use Case

Carlo Torniai, Melissa Haendel, Shanshan Chen, 2011, International Conference on Biomedical Ontology.

Bioinformatics of behavior

Melissa Haendel, Elissa J. Chesler, 2012 .

Beyond Low Earth Orbit: Biological Research, Artificial Intelligence, and Self-Driving Labs pdf

Suchi Saria, Ny, Lauren M Sanders, 2021, ArXiv.

A Simple Standard for Sharing Ontological Mappings (SSSOM) pdf

Christopher G Chute, Simon Jupp, Tania Tudorache, 2021, Database J. Biol. Databases Curation.

Beyond Low Earth Orbit: Biomonitoring, Artificial Intelligence, and Precision Space Health pdf

Suchi Saria, Ny, Marinka Zitnik, 2021, ArXiv.

Enhancing the Human Phenotype Ontology for Use by the Layperson

Melissa Haendel, Sebastian Köhler, Mark Engelstad, 2016 .

Improved exome prioritization of disease genes through cross-species phenotype comparison

Damian Smedley, Sebastian Bauer, Melissa Haendel, 2014, Genome research.

ClinGen advancing genomic data‐sharing standards as a GA4GH driver project

Melissa Haendel, Matthew H. Brush, Aleksandar Milosavljevic, 2018, Human mutation.

Connecting evolutionary morphology to genomics using ontologies: a case study from Cypriniformes including zebrafish.

Nelson Rios, Monte Westerfield, Melissa Haendel, 2007, Journal of experimental zoology. Part B, Molecular and developmental evolution.

Capturing phenotypes for precision medicine

Melissa Haendel, Peter N. Robinson, Christopher J. Mungall, 2015, Cold Spring Harbor molecular case studies.

Dataset Descriptions: HCLS Community Profile

Gary D. Bader, Michel Dumontier, Alasdair J. G. Gray, 2015 .

Phenotype ontologies: the bridge between genomics and evolution.

Chris Mungall, Monte Westerfield, Melissa Haendel, 2007, Trends in ecology & evolution.

Effective diagnosis of genetic disease by computational phenotype analysis of the disease-associated genome

Damian Smedley, Yves Moreau, Melissa Haendel, 2014, Science Translational Medicine.

matchbox: An open‐source tool for patient matching via the Matchmaker Exchange

Damian Smedley, Melissa Haendel, Julius O. B. Jacobsen, 2018, Human mutation.